Mesorhizobium australicum: Mesau_00823
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Entry
Mesau_00823 CDS
T02417
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mam
Mesorhizobium australicum
Pathway
mam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mesau_00823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mam03400
]
Mesau_00823
Enzymes [BR:
mam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mesau_00823
DNA repair and recombination proteins [BR:
mam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mesau_00823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AGB43307
UniProt:
L0KDE8
LinkDB
All DBs
Position
complement(865510..868050)
Genome browser
AA seq
846 aa
AA seq
DB search
MASSLEQYHSKRDFKKTAEPAGKVARGKKAGGIFVVQKHAATRLHYDFRLEHDGVLWSWA
VTRGPSLDPHEKRLAVHVEDHPIDYAGFEGTIPKGEYGGGSVLVWDEGTWMPEGDPAKMM
AKGHINFELEGHKLRGKWHLVRLRPRPGEKRDNWLLIKSDDAAARPGEDILQDEPKSVKS
GLTIEEVGEGKAAKGEKPKVWHSNKPAAGKAKTGGKKLDFIEPQLATLERDAPSGQDWLH
EVKFDGYRMQAQIAGTDVRLLTRTGLDWTEKFGGEIAAELAGLKCSDAILDGEIVVLANS
GVSSFALLQQDLSAKRTNRFIYYVFDLMRLDGKDLRREPLVERKQALQALLGEPSDTAAV
RFSDHFAEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPAWVKSKCTARQEFVIGGYLP
SDKTGRGLRSLLVGYFEGGSLHYAGRVGTGFSTKSANDLKKKLDALKADASPFDAAVPKG
KGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEEVVQEKPNATGTGAAGTKTA
TGKSPAKAKPAAGSAITAATAAKTSVKLSHPDKLLWPDEKISKQALLDHYALVWPRMKQF
VVDRPLSLVRAPDGVGGQRFFQKHASPGMHAKIEKTKDPTDGEEILFIRDFDGIAALVQL
GVVEIHIWGCTIDKLEQPDQVVFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSG
GKGFHVVVPLKPSADWAEVKGFAHDFARALEQGAPDRYTATLSKKARTGKIFVDYLRNGS
GATTVAPYSSRAKKGATVSMPVTWAEIEAGLPPNAFPIGDKTTLKRLSEADPWVDFFKKG
KVLKRG
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggccagcagcctcgaacagtatcattcgaagcgcgacttcaagaagaccgccgagccg
gccggcaaggttgcgcgcggcaagaaggccggcggcatcttcgtcgtccagaagcatgcc
gccacaaggctgcattacgattttcgcctcgagcatgacggcgtgctgtggagctgggcg
gtgacgcgcggtccgagcctcgacccgcacgaaaagcggctggccgtgcatgtcgaggat
catcccatcgactatgccggcttcgaaggcaccatccccaagggcgagtatggcggcggc
tcggtcctcgtctgggacgagggcacctggatgcccgagggcgatccggccaagatgatg
gcgaaggggcacatcaacttcgagctcgagggccacaagctgcgtggcaagtggcacctg
gtgcggctgcggccgcggcccggcgaaaaacgcgacaactggctgctgatcaagtcggac
gatgccgccgcacgccccggcgaggatattctgcaagacgagccgaaatcggtgaaatca
ggcctgacgatcgaggaggtcggtgaaggcaaggcggccaagggcgagaagccgaaggtc
tggcattcgaacaagccggccgccggcaaggccaagaccggcggcaagaagctcgatttc
atcgagccgcagctcgccacgctggagcgcgacgcaccgtcgggccaggactggctgcat
gaggtgaagttcgacggctaccgcatgcaggcgcagatcgccggcaccgacgttcggctc
ctgacccgcaccggcctcgattggacggaaaaattcggcggcgagatcgcggccgaactc
gccgggctgaaatgcagcgacgccatcctcgacggcgagatcgtcgtgctggccaacagc
ggggtatcgtccttcgcgctgctgcagcaggatctttcggcgaagcggacgaaccgcttc
atctattacgtcttcgacctgatgcggctcgacggcaaggatttgcgccgcgagccgctt
gtcgagcgcaagcaggccctgcaggcgctgctcggcgagccgtccgacaccgcggcggtg
cgtttttccgaccattttgccgaacccggcaagatcatgctggaacatgcctgccgcatg
gggctggaaggcgtcgtctcaaaacgcgccgatgcgccctaccggagcgggcgcggtccg
gcatgggtcaaatcgaaatgcacggcacggcaggaattcgtcattggcggctatctgccg
tcggacaagaccggacgcggcctgcgctcgctgctggtcggctatttcgaaggcggcagc
ctgcactatgccggccgtgtcggcaccggcttctccaccaagagcgccaacgacctgaag
aagaagctcgatgcgctgaaggcggacgcctcgcccttcgatgcggccgtgccgaagggc
aagggcctggtctgggtcaagccggaactggtcggcgaagtggagtttcgcagctggacg
tcggaccgtattatacgccatgcttcgttccaggggctgcgcgaggacaagccggcggag
gaagtcgtgcaggaaaagcccaatgcaacgggaacaggggcagcgggaaccaaaacagcg
acaggcaaaagccccgccaaggccaagccggcggcaggcagcgccattacggcagcaaca
gcggcgaaaaccagcgtgaagctgtcccacccggacaagcttctgtggcccgacgaaaag
atctcgaagcaggccctgctcgatcactacgcgctggtatggccgcgcatgaagcaattc
gtggtcgaccgcccgctcagccttgtcagggcgcccgatggcgtcggcggccagcgtttc
ttccagaagcatgcctcgcccggcatgcatgcgaagatcgaaaagaccaaggaccccacg
gatggcgaggaaatcctgttcatccgcgatttcgacggcatcgcggcgctggtccagctc
ggcgtggtcgagatccacatctggggctgcaccatcgacaagcttgaacagcccgaccag
gtcgtcttcgacctcgaccccgacgagggcgtcgatgtgaaggcggtgcgcgaggcggcg
ctcgacatcaggggcaagctcgacgagctgtcgctgcccaatttcgtcaagacatcgggc
ggcaagggctttcacgtcgtcgttccgctgaagccgtcggcggattgggccgaggtcaaa
ggcttcgcccatgatttcgccagggcgctggagcaaggcgcgccggaccgttacaccgcg
acgctgtcgaagaaggcgcgcacggggaagatcttcgtcgactacctgcgcaacggcagc
ggcgcgaccaccgtcgcgccctactcctcgcgcgccaagaaaggcgcgacggtgtcgatg
ccggtgacctgggccgagatcgaggccggcctgccaccgaacgccttcccgatcggcgac
aagacgacgctgaaacggctctcggaagccgatccgtgggtggatttcttcaagaagggg
aaggtgctgaagcggggctag
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