KEGG   Mycobacterium avium subsp. paratuberculosis MAP4: MAP4_0680Help
Entry
MAP4_0680         CDS       T02662                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mao  Mycobacterium avium subsp. paratuberculosis MAP4
Pathway
mao03030  DNA replication
mao03410  Base excision repair
mao03420  Nucleotide excision repair
mao03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MAP4_0680
   03410 Base excision repair
    MAP4_0680
   03420 Nucleotide excision repair
    MAP4_0680
   03430 Mismatch repair
    MAP4_0680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mao03032]
    MAP4_0680
   03400 DNA repair and recombination proteins [BR:mao03400]
    MAP4_0680
Enzymes [BR:mao01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MAP4_0680
    6.5.1.6  DNA ligase (ATP or NAD+)
     MAP4_0680
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MAP4_0680
DNA replication proteins [BR:mao03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MAP4_0680
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MAP4_0680
DNA repair and recombination proteins [BR:mao03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MAP4_0680
   NER (nucleotide excision repair)
    Other NER factors
     MAP4_0680
   MMR (mismatch exicision repair)
    Other MMR factors
     MAP4_0680
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AGL35633
LinkDB All DBs
Position
complement(743902..745461)
Genome map
AA seq 519 aa AA seqDB search
MSPSHAKLATVLLFDVATASADVGGTPSRLTKVARIADLLRRAAPNAALVAIVVSWLSGE
LRQRQIGVGWAALRSRPPAAAHPTLTVVAVDAAFAEIGAVAGKGAQARRAALLNALFAAA
TETEQTFLLRLLGGELRQGALAGIMADAVARAAGIPAAAVQRAAMLGGDLPAVAAAALSG
EASALDAFTLRVGRPVAPMLAQTAAGVAQAIERHGGQAIFEAKLDGARVQIHRAGDQVTV
YTRSLDDVTARLPEVVTATLALPVEALIADGEAIALRPDNSPQRFQVTASRFGRSLDVAA
AVAAQPLSVFIFDILHCDGIDLLDAPTTDRLAALDALVPPAQRVDRLLTADPDAAGRFLE
ATLAAGHEGVMAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHL
GARDPATGEFVMVGKTFKGMTDAMLDWQTARFTELAVGGTDGYVVRVRPEQVVEVAVDGV
QKSSRYPGGLALRFARVLRYRDDKGPAEADTIDAVRALY
NT seq 1560 nt NT seq  +upstreamnt  +downstreamnt
ttgtcaccgagccatgccaagctggcgaccgtactgcttttcgacgtggcgacggcgtcg
gccgacgtcgggggcacgccgtcgcggctgaccaaagtcgcccgcatcgccgacctgctg
cgccgggccgcacccaacgccgccctggtcgcgatcgtcgtgtcgtggctgtccggtgag
ttgcggcagcgccagatcggggtcggctgggcggcgttgcgctcgcgcccgcccgcggcc
gcacatcccacgctgaccgtcgtcgcggtggacgccgccttcgccgagatcggcgccgtg
gcgggcaagggcgcccaggcgcgccgcgcggccctgctgaacgcgttgttcgccgcggcc
accgagaccgagcagacgtttctgctgcggctgctgggcggcgaactgcgccagggcgcg
ctggccgggatcatggccgacgccgtcgccagggccgccgggataccggccgcggcggtg
cagcgcgccgcgatgctgggcggtgacctgccggcggtggcggcggccgcgctgtccggg
gaggcgtccgcgctggacgccttcacgctgcgggtgggccggccggtcgcgccgatgctg
gcccagaccgcggcgggtgtggcccaggcgatcgaacgccacggcgggcaggcgattttc
gaggccaagctggacggggcgcgggtgcagatccaccgcgccggcgaccaggtcaccgtc
tacacccgaagcctcgacgacgtcaccgcccgactgcccgaggtggtgaccgcgacgctg
gcgctgccggtcgaggccctgatcgccgacggtgaggcgatcgcgctgcggccggacaac
tcaccgcagcgcttccaggtcaccgcctcacgcttcggccgctcgctcgatgtcgcagca
gccgttgcggcgcaaccactttcggtgttcatcttcgacatcctgcactgcgacggcatc
gacctgctggacgcgccgaccaccgaccggctggccgcgctggacgccctggtgccgccc
gcgcagcgggtcgaccggctgctcaccgccgaccccgacgcggcgggccggttcctggag
gcgacgctggccgccgggcacgagggcgtgatggccaaggcgccgggcgcgccgtatcag
gcgggccggcgcggggcgggctggctcaaggtcaagccggtgcacacgctggatctagtg
gtgctcgccgtggagtggggctcggggcggcgccgcggcaagctgtccaacatccacctg
ggcgcccgcgacccggccaccggcgaattcgtcatggtgggaaagactttcaagggcatg
accgacgcgatgctggactggcagacggcccggttcaccgagctggccgtcggcggcacg
gacggctacgtggtgcgggtgcgacccgagcaggtggtcgaggtggcggtggacggtgtg
cagaaatcctcgcgctaccccggcgggctggcgctgcggttcgcccgggtgctgcgctac
cgcgacgacaagggccccgcggaggccgacaccatcgacgccgtccgggcgctgtactga

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