Mycobacterium avium subsp. paratuberculosis MAP4: MAP4_0746
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Entry
MAP4_0746 CDS
T02662
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mao
Mycobacterium avium subsp. paratuberculosis MAP4
Pathway
mao03030
DNA replication
mao03410
Base excision repair
mao03420
Nucleotide excision repair
mao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MAP4_0746
03410 Base excision repair
MAP4_0746
03420 Nucleotide excision repair
MAP4_0746
03430 Mismatch repair
MAP4_0746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mao03032
]
MAP4_0746
03400 DNA repair and recombination proteins [BR:
mao03400
]
MAP4_0746
Enzymes [BR:
mao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MAP4_0746
DNA replication proteins [BR:
mao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MAP4_0746
DNA repair and recombination proteins [BR:
mao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MAP4_0746
NER (nucleotide excision repair)
GGR (global genome repair) factors
MAP4_0746
MMR (mismatch excision repair)
DNA ligase
MAP4_0746
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MAP4_0746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AGL35697
LinkDB
All DBs
Position
812143..814224
Genome browser
AA seq
693 aa
AA seq
DB search
MSSAEADSVPPEVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPE
LRVADSPTQLVGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPHYLC
ELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLE
VRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGR
TEGFSPKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYDLQHEIDGVVVK
VDDVALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFVMPTTCPE
CGTPLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAATALLKAGVIA
DEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVALWRVLVALSIRHVGPT
AARALATEFGDLDSIMSASTERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRM
ADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPILDEDGFRKLLAEGPPETPAD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcggcagaggctgattcggtaccgcccgaggtgcggcggcagtggcaggagctg
gccgaaacggtccgcgaacaccagttccgctactacatcaaggacgcgccgatcatctcg
gacgccgagttcgacgcgctgttcaacgagctgctcgccctggaggagcgccaccccgag
ctgcgggtggccgattcgcccacgcagctggtcggcggggcgggtttcgccaccgacttc
gccgaggcggcgcacctggagcggatgctgagcctcgacgacgtcttcgacaccgacgag
ctaatcgcctggagcaatcgcgtcgagaacgagatcggcaaggacccgcactacctgtgc
gagctcaagatcgacggggtggccctgtcgctggtctaccgcgacggccggctggaacgc
gccgccacccggggcgacggccgggtcggcgaggacgtgacgctcaacgcacgcaccatc
gacgacgtgcccgaacgcctctcgcccagcgacgacttcccggttccggcgctgctcgag
gtgcgcggcgaggtgttcttcctgctcgccgacttcgaggcgctcaacgccagcctggtc
gaagacggcaaggcgccgttcgccaatccgcgcaacagcgcggccgggtcgctgcgccag
aagaacccggccgtcaccgcgcggcgcaagctgcggatgatctgccacggcatcggccgc
accgaggggttctcgccgaaaacccagcacgaggcctacaccgcgctgagcgtgtggggg
ctgccggtggccgaacagaccgcgcgggtgcgcgggctggccgcggtgcaggagcggatc
ggctactggggcgagcaccgctacgacctgcaacacgagatcgacggtgtggtggtcaaa
gtcgacgacgtcgcgttgcagcgccggctcggcgccacctcgcgcgcgccgcggtgggcg
gtcgcctacaagtacccgccccaggaggcgcagaccaagctcctcgacatccgcgtcaac
gtcgggcgcaccgggcgcgtcaccccgtttgcgttcatgaccccggtcaaggtggccggg
tcgacggtggggctggccaccctgcacaacgccgccgaggtcaagcgcaagggcgtgctg
atcggcgacaccgtgatgatccgcaaggccggcgacgtgatccccgaggtgctgggcccg
gtcgtcgacctgcgcgacggcaccgaacgcgaattcgtcatgcccacaacgtgtcccgag
tgcggcaccccgctggcgccggccaaggagggcgacgccgacatccgctgccccaacgcc
cggtcctgcccggcgcagctgcgagagcgggtgtttcacgtcgccggccgcggcgcactc
gacatcgaggggctgggctacgaggcggccaccgcgctgctcaaggccggggtgatcgcc
gacgagggcgacttgttcgcgctcaccgaggacgacctgctgcgcaccgagctgttccgg
accaaggccggcacgttgtccgcgaacggcacacggctgctgcagaacctgcagaaggcg
aaaaaggttgcgctgtggcgtgttttggtggcgctgtcgatccggcacgtggggccgacg
gcggcgcgcgccctggcgaccgagttcggcgatctggactcgatcatgtcggcgtccacc
gagcggctcgccgcggtggagggggtcggcccgacgatcgcggcggcgctcaccgaatgg
ttcaccgtcgactggcaccgcgcgatcgtggacaagtggcgggccgccggcgtgcggatg
gccgacgagcgcgacgccagcgtgccgcgcacgctggaggggctgacggtggtggtcacc
gggtcgctggccggtttctcccgcgacgacgccaaggaggcgatcctggcgcgcggcggc
aaggccgccggttcggtgtcgaagaagaccgactacgtggtggccggcgattcgccgggc
tccaagtacgacaaggcggtcgagctcggcgtgcccatcctggacgaggacggcttccgc
aagctgctggccgagggcccgcccgaaaccccggcggactga
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