WebDBGET Entry Retrieval Failed
Entry name is required as an argument.
usage: www_bget [seqopt|dataopt] db:entry [db:entry ...] [wwwopt]
www_bget [seqopt|dataopt] db entry [entry ...] [wwwopt]
www_bget [seqopt|dataopt] db entry [db:entry ...] [wwwopt]
whrere:
seqopt : -f [-n num[,num ...]
dataopt: -f k for GLYCAN, RPAIR, DRUG and COMPOUND
-f m for DRUG and COMPOUND
wwwopt : -kcf
-kcf for GLYCAN, RPAIR, DRUG and COMPOUND
Retrieve a single entry:
https://www.genome.jp/dbget-bin/www_bget?dbname+identifier
https://www.genome.jp/dbget-bin/www_bget?dbname:identifier
dbname = Database name or organism name
identifier = Entry name (accession number) or gene name
ex.)
https://www.genome.jp/dbget-bin/www_bget?ko:K00001
https://www.genome.jp/dbget-bin/www_bget?cpd+C00001
Retrieve multiple entries:
https://www.genome.jp/dbget-bin/www_bget?dbname+identifier1+identifier2+...
https://www.genome.jp/dbget-bin/www_bget?dbname1:identifier1+dbname2:identifier2+...
The first form is applicable only to multiple entries from a single database.
ex.)
https://www.genome.jp/dbget-bin/www_bget?hsa+20+21+22
https://www.genome.jp/dbget-bin/www_bget?hsa:20+hsa:21+hsa:22
Retrieve sequence entries in FASTA format:
https://www.genome.jp/dbget-bin/www_bget?-f+dbname+identifier1+identifier2+...
https://www.genome.jp/dbget-bin/www_bget?-f+dbname1:identifier1+dbname2:identifier2+...
When the entry contains multiple sequences, specify as follows:
-f+-n+1 first sequence in FASTA format
-f+-n+2 second sequence in FASTA format
-f+-n+a amino acid sequence in FASTA format (GENES database only)
-f+-n+n nucleotide sequence in FASTA format (GENES database only)
ex.)
https://www.genome.jp/dbget-bin/www_bget?-f+eco:b0002
https://www.genome.jp/dbget-bin/www_bget?-f+-n+a+eco:b0002
Retrieve entries with KCF data for GLYCAN, RPAIR, DRUG and COMPOUND
https://www.genome.jp/dbget-bin/www_bget?dbname+identifier1+identifier2+...+-kcf
https://www.genome.jp/dbget-bin/www_bget?dbname1:identifier1+dbname2:identifier2+...+-kcf
ex.)
https://www.genome.jp/dbget-bin/www_bget?cpd+C00032+-kcf
Retrieve KCF entries for GLYCAN, RPAIR, DRUG and COMPOUND
https://www.genome.jp/dbget-bin/www_bget?-f+k+dbname+identifier1+identifier2+...
https://www.genome.jp/dbget-bin/www_bget?-f+k+dbname1:identifier1+dbname2:identifier2+...
ex.)
https://www.genome.jp/dbget-bin/www_bget?-f+k+cpd+C00032
Retrieve MOL entries for DRUG and COMPOUND
https://www.genome.jp/dbget-bin/www_bget?-f+m+dbname+identifier1+identifier2+...
https://www.genome.jp/dbget-bin/www_bget?-f+m+dbname:identifier1+dbname:identifier2+...
ex.)
https://www.genome.jp/dbget-bin/www_bget?-f+m+cpd+C00032
The list of options may be viewed by the -h option:
https://www.genome.jp/dbget-bin/www_bget?-h
DBGET integrated database retrieval system