KEGG   Methanogenic archaeon ISO4-H5: AR505_1277Help
Entry
AR505_1277        CDS       T04272                                 

Definition
(GenBank) ATP-dependent DNA ligase DnlI
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
marc  Methanogenic archaeon ISO4-H5
Pathway
marc03030  DNA replication
marc03410  Base excision repair
marc03420  Nucleotide excision repair
marc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:marc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AR505_1277
   03410 Base excision repair
    AR505_1277
   03420 Nucleotide excision repair
    AR505_1277
   03430 Mismatch repair
    AR505_1277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:marc03032]
    AR505_1277
   03400 DNA repair and recombination proteins [BR:marc03400]
    AR505_1277
Enzymes [BR:marc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AR505_1277
    6.5.1.6  DNA ligase (ATP or NAD+)
     AR505_1277
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AR505_1277
DNA replication proteins [BR:marc03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AR505_1277
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AR505_1277
DNA repair and recombination proteins [BR:marc03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AR505_1277
   NER (nucleotide excision repair)
    Other NER factors
     AR505_1277
   MMR (mismatch excision repair)
    Other MMR factors
     AR505_1277
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AMH94992
UniProt: A0A0X8V1M5
LinkDB All DBs
Position
complement(1360673..1362472)
Genome map
AA seq 599 aa AA seqDB search
MQFCQLAEVFDRLESTSSRLEMTDILSDFFRKVEPSELRQMIYLSVGRLHPEFYPQELGM
ADKLVLKAIASVSGRTQKEVDDLWIKLGDPGEVAEQMVAKKKQMTLFSEPLTFKSVVEGL
TLIETATGKDSQDRKMKHLARMLHDSNPVEARYICRIVTGRMRVGAGAMTVMDALAAAFA
TKEERPYIERAFNITCDMGLVAETLAAGGMEAVGKIGVAVGSPVKVMLAERLRSLPDIMD
RMGGKCAFEYKYDGMRVQAHIRKGEDGFVKLYSRRLEDLTHNFPDVAEALSRQLKGTEAI
IEGECVAYDPSNGSLLPFQNVTHRRKKHGMDKAVEEIPVKIFMFDLLYIDGVDYTVKPYA
ERRAKLKDSFAPREDGIDIVDYTTQAVITDEDQAQEFFDRAIASKCEGIMAKSLEDVSIY
RAGSRGFLWIKYKKDYTQALVDTFDLAVVGAFYGMGKRAGVYGALLMAAYDPDTGKFGTA
CKLGTGFDDAFLAELPNMLEKYRSEKKPSSLEVEMVPDVWFVPGVVLEVTAADISISPIH
TIAFGSIKEDAGLGLRFPRFTGRVRDDKTPEQCTTSAEIVEFYQMQEERDSDESEPSES
NT seq 1800 nt NT seq  +upstreamnt  +downstreamnt
atgcaattctgccagctcgcggaggtcttcgaccgcctggaatccaccagcagccgtctc
gagatgaccgacatattatcggatttcttcaggaaggtggaaccgtccgagctcaggcag
atgatctacctctccgtaggaagactccatcccgagttctaccctcaggagctgggtatg
gcggataagctggtgctcaaagcgatagcttccgtgtcgggaaggacccagaaggaggtc
gacgacctgtggatcaaactcggcgatccaggagaggtggccgagcagatggtcgccaag
aagaagcagatgaccctgttctccgaaccgctcactttcaagtccgtggtggagggtctg
actctcatagagacggctacaggtaaggattcgcaggaccgcaagatgaagcatctggca
cgtatgctccacgactccaatccggtggaagcgagatacatctgcaggatcgtcaccgga
aggatgagggtgggtgccggggcaatgaccgtcatggatgctctcgccgcggcgttcgcc
actaaggaggagcgcccctacatcgagagagcgttcaacatcacctgcgacatgggtctc
gtggccgagaccctggccgccggcggcatggaggccgtcgggaagatcggtgtcgccgtg
ggaagccccgtcaaggtgatgctggcggagcgtctccgttcgctccccgacataatggac
aggatgggcgggaaatgtgcgttcgagtacaagtacgacggaatgcgcgtgcaggcccac
atcaggaagggcgaggacggtttcgtgaagctctactccaggaggctggaggaccttacc
cataacttccccgatgtggcggaggccctgagcagacagctgaagggtactgaggcgatc
atcgagggggagtgcgtagcatacgatccgtcgaacggttccctattaccgttccagaac
gtcacccacaggaggaagaagcacggcatggacaaggccgtggaggagatcccggtcaag
atcttcatgttcgacctgctgtacatcgacggtgtcgattacaccgtgaaaccctatgcc
gagaggagggccaaactgaaggattccttcgccccccgcgaggacggaatcgacatcgtg
gattatacgacgcaggcggtcatcaccgacgaggaccaggcccaggagttcttcgacagg
gccatcgcctccaagtgcgagggaatcatggccaagtctttggaagatgtgtcaatctac
cgtgccgggtccagaggattcctgtggatcaagtacaagaaggattacacgcaggcactg
gtggacaccttcgacctcgctgtcgtgggagcgttctacggtatgggaaagagggcagga
gtgtatggcgcattattgatggctgcatatgacccagacacaggtaagttcggtaccgcc
tgcaagctcggtaccggtttcgacgatgccttcctggcggaactccccaacatgctcgag
aagtacaggagcgagaagaagccctcttcgctggaagtggagatggtccccgatgtgtgg
ttcgtccccggcgtggtcctggaggtcaccgccgccgatatcagcatcagccccattcac
accatcgccttcggctcgatcaaggaggatgccggtctcggactcaggttccctagattc
accggccgtgtgagggacgacaagaccccggagcagtgcaccacgtccgcggagatcgtc
gagttctatcagatgcaggaggagagggattccgacgaatcggagccttccgaatcctga

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