KEGG   Marinobacter sp. CP1: ACP86_07820Help
Entry
ACP86_07820       CDS       T04052                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mari  Marinobacter sp. CP1
Pathway
mari03030  DNA replication
mari03410  Base excision repair
mari03420  Nucleotide excision repair
mari03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mari00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ACP86_07820
   03410 Base excision repair
    ACP86_07820
   03420 Nucleotide excision repair
    ACP86_07820
   03430 Mismatch repair
    ACP86_07820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mari03032]
    ACP86_07820
   03400 DNA repair and recombination proteins [BR:mari03400]
    ACP86_07820
Enzymes [BR:mari01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ACP86_07820
    6.5.1.6  DNA ligase (ATP or NAD+)
     ACP86_07820
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     ACP86_07820
DNA replication proteins [BR:mari03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    ACP86_07820
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     ACP86_07820
DNA repair and recombination proteins [BR:mari03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     ACP86_07820
   NER (nucleotide excision repair)
    Other NER factors
     ACP86_07820
   MMR (mismatch exicision repair)
    Other MMR factors
     ACP86_07820
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AKV96071
UniProt: A0A0K1U8K6
LinkDB All DBs
Position
complement(1662196..1663050)
Genome map
AA seq 284 aa AA seqDB search
MPFRLFSAALPVLISLLFSPVAVAKQPELTLANVYQKGMPLDGYWVSEKLDGVRAYWTGE
RFLSRGGHEYRAPGWFTRGFPARPLDGELWMGRGRFAELSGAVRQVVPDDNDWRRIRFMV
FDLPDKEATFDQRLARLRVLIQEVESPYMALVDQQRASTHEKLMQRLDKIVDGGAEGLML
KLGSSHYRSGRSDDLLKVKQYQDAEAVVVHHLPGKGKYEGLMGSLLVELDDGRRFRIGTG
FSDSERASPPRPGTTITFKHYGLTATGLPRFASFLRIRNDEPAR
NT seq 855 nt NT seq  +upstreamnt  +downstreamnt
atgccgtttcgattgttcagcgccgcgctgccggtgctgatttcccttctgttttccccc
gtggcggtagcgaaacagcccgagctgacactcgccaacgtgtatcaaaagggcatgccg
ctggacggctactgggtcagtgaaaagctcgacggggtgcgagcatactggactggcgag
cgatttctttcccgtggcggtcatgagtatcgggcacccggttggttcaccagagggttt
ccggcacgtcccctggacggtgagctctggatggggcggggccgttttgcggaattgtca
ggggcggtgcgtcaggtggtgcccgatgacaacgattggcggcggattcggttcatggtg
tttgatcttccggataaggaggcaaccttcgaccaacgtttggcccggctgcgtgtatta
atccaagaggttgaatcaccctacatggcgcttgtcgatcagcaacgggcgagcacccat
gagaaactgatgcagcgtttggataagatcgtcgacggcggcgcagagggtttgatgttg
aagctggggtccagtcattaccgaagtgggcgctccgatgatctactgaaagtaaaacag
tatcaggatgccgaagcggtggttgttcatcatctgccgggaaagggcaaatacgagggg
ctgatggggtcactgctggtggagttggacgatggcaggcgattccggattggtacgggg
ttcagcgattccgagcgagcgtctcctccgagacccggaaccacgatcacattcaagcac
tatggcctcacagccacggggctgcctcgctttgccagctttctccgtatccggaatgat
gaacctgcgcggtaa

DBGET integrated database retrieval system