KEGG   Maribacter sp. 1_2014MBL_MicDiv: YQ22_16380Help
Entry
YQ22_16380        CDS       T04570                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
marm  Maribacter sp. 1_2014MBL_MicDiv
Pathway
marm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:marm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    YQ22_16380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:marm03400]
    YQ22_16380
Enzymes [BR:marm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YQ22_16380
DNA repair and recombination proteins [BR:marm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     YQ22_16380
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: APA65747
LinkDB All DBs
Position
complement(3903327..3905744)
Genome map
AA seq 805 aa AA seqDB search
MSLKQYYDKRNFEKTPEPKGELQPVSNNQRFVIQRHAASRLHYDLRLEINGTLKSWAIPK
GPSMNPTDKRLAVRTEDHPLEYLTFHGTIPKGNYGAGHMIIWDTGTFEVDTKETDKELSE
QLAIGNIKLNFYGSKIRGRFALVRTTSKNDTEQWLLLKKKDEYAITTFYDAETLVPISTT
RKKKFTTQLKPGSILQPMLASSTKDIFNDPNYIFELKWDGYRVIAHITKGRVLLQSRNGI
NYNIKFSKLHDELATIEHDVILDGEVVLVDSNGVSQFGELQNYPDSTGELRYYVFDMLYL
NGHSMLDLKLIERKSLINDVIGDLTITQYCDHIEGMGTALFEKAIEAGMEGVMAKEQNSN
YAVGSRTEKWLKVKGVQSTDAIICGFTESANSPELIGSLILGQYQQDKLKYIGNCGTGFT
DKSRKELQLLLSKYEVNENVFENKITLKGRIPHWTQPILECEIIFSELTKNGLLRNPVLK
RIKSEITKIPIEPKNTEVSIKKSTSSKEFITIDGLKVPISNLDKIYWPESKITKFNLIDY
YLNISDYLLPHLIDRPQNLHRHPNGIHQESFYQKDNDYLPDWFETVLVYSKSSEREINYL
MCQNTASLIYMANLGCIEINPWSSRKLSLDKPDYGIIDLDPPKNMAFKKVVEVAKEFHKI
LRNLNIESFCKLSGSKGIHIYLPMSTKYSYEEVRNFIKLLCLLVEERLPELTTLERSINK
RKGRIYLDYLQNRRGHTIASVHSVRPIVEAPISAPLHWQELNNKLTPRHFKMKDYITRIK
EQGDLFKKISEVNFDMNNALMQIDK
NT seq 2418 nt NT seq  +upstreamnt  +downstreamnt
gtgagcttaaaacagtattatgataagcggaattttgagaaaacccccgagcctaaaggg
gaattacagcctgtttccaacaaccaaagatttgtaattcagcgccatgcggcaagtaga
ttacattatgaccttaggttagaaatcaacggaacactcaaaagttgggcaatacctaaa
ggaccttcaatgaatccgacagataaacgcttggctgtgcgtactgaagatcatccacta
gaatacctgacttttcacggcacaataccaaagggaaattacggtgcaggccatatgatt
atttgggatacgggaacttttgaggtggataccaaggaaacggataaagaactatccgaa
caactggcaataggcaatatcaaattgaatttttacgggagtaaaattagaggacgtttt
gcattagttcgtaccacttcaaaaaacgataccgaacaatggttactgcttaaaaagaaa
gatgaatatgccattaccactttttatgatgctgaaacattggttcctatttctacaaca
cgaaaaaagaaatttaccacacaacttaaaccgggatccatattacagcccatgctggca
tcttccactaaagatatattcaatgacccaaattatatttttgaacttaaatgggatggc
tatagggttatagcacacattacaaaaggtagggtactcttacagtcaaggaatggtatc
aactataacatcaaattttccaaacttcatgatgaattagccactattgaacacgatgtt
attttagatggtgaagtagttctggtggatagcaatggcgtatcgcaatttggtgaactt
caaaattaccctgacagtacgggagaattacggtattatgtttttgacatgctttacctg
aacggtcatagcatgctggacctaaaattgatagagcgaaaaagtcttatcaatgatgtt
ataggtgatttgactataacgcaatactgtgaccatattgaaggtatgggtaccgcactt
tttgaaaaagctattgaagcgggtatggaaggtgtaatggccaaagagcaaaattccaat
tacgctgttggatccagaacagaaaaatggttaaaagtcaagggcgttcaaagtacagat
gctatcatctgtggttttaccgaatccgctaatagtccagaattgatcggctctttaatt
cttggtcaatatcaacaggacaaattaaaatatatcggcaattgtggtacaggctttacc
gataaaagccgtaaagaattacaattacttctttctaaatatgaggtgaacgaaaatgtg
tttgaaaataaaataacattaaaaggtagaataccacactggacacaacctatattggaa
tgtgagattatattctctgaactcacaaagaacggattgttaagaaatcctgttttaaaa
cgtattaaaagtgaaattactaaaataccaattgaaccaaaaaataccgaggtgagcatt
aaaaaatcaacatcctcaaaagagtttattactattgacggattaaaagtgcccattagt
aatctagataaaatatattggccagaatcaaaaattaccaagttcaacctgattgattat
tatttgaatatatctgattacctactaccccatttgatcgatcgtccccaaaatttacat
cgtcatccaaatggtatacatcaagaaagtttttatcagaaggataatgattacttgccc
gattggtttgagacggtattagtatactccaaatcttctgaacgcgaaataaattaccta
atgtgccaaaataccgcgtcattaatttatatggccaatttagggtgcattgaaattaat
ccgtggagttctagaaaattgagcttggacaagcccgattacggcattattgatttagat
ccaccaaagaatatggcatttaaaaaagtggttgaagtagcaaaagagttccataaaata
ttaagaaatctaaatattgaaagtttttgcaagctatctggatctaaaggcattcatatt
tacctacccatgtctaccaaatacagttatgaggaagtccgaaattttattaaactttta
tgtctattggtggaagaaagactaccagaattgaccactttagaacgtagtataaacaaa
cgaaaaggtaggatatatttagactatttacagaaccgtagaggtcacaccattgcatcg
gtccactcggtaagaccaattgtggaagcaccaatttctgccccattacattggcaagaa
ttaaataataaattaacccctagacattttaaaatgaaagattatataacaagaattaaa
gagcaaggcgacttgttcaaaaaaatttcagaggttaattttgacatgaataacgcactt
atgcaaatagataaataa

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