Marinilactibacillus sp. 15R: BKP56_00570
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Entry
BKP56_00570 CDS
T04573
Definition
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Organism
marr
Marinilactibacillus sp. 15R
Pathway
marr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
marr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BKP56_00570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
marr03400
]
BKP56_00570
Enzymes [BR:
marr01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.-
BKP56_00570
DNA repair and recombination proteins [BR:
marr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BKP56_00570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CarD_CdnL_TRCF
TRCF
UvrB_inter
DEAD
Helicase_C
ResIII
UB2H
AAA_22
ATP-synt_ab
DUF1474
Motif
Other DBs
NCBI-ProteinID:
API87918
UniProt:
A0A1L4BVQ2
LinkDB
All DBs
Position
complement(123169..126711)
Genome map
AA seq
1180 aa
AA seq
DB search
MSTITSFLSEKPSVQKVFSTIGQRQTQLITGIAGSARALLLSSLLKEKQKQIVIIAQNLY
HANQLMADLTGLVPDDQLFVFSVDDMIHAEMAIASPEARAERVQALDYLLSGKPGIVIIP
LSGIRKLLPPKEIFQASHINIELGAEIEFDHFAESLIGMGYRREQKVAAPGEFSIRGGII
DVYPLTEENPVRIELFDVEVDSLRFFDADTQRSIENVSKISLIPATDFLVTKEQMKPAAE
KLKKALSRNLAALTDNEAKQILSKQLNSVIRGLETGELTDDLVKFRDFVYEKHSSIIDYM
ADDAILAMDEYPRILEKDALLNEEEAEWATSQLSQRLVLQKQTFSNDFREELKKNQHDTL
HFALFQKGMGGLRFDAIHPFQYRNMQQFFGQMHLLKTEMDRWEKLGYTVVVMTADAERAD
KVNRTLLDFEIPSILSGNGEIQEKKIQVISSTVQNGFELPTEKLAVLTEKELFNRVNRKK
VRRQNITNAERLKSYTELNPGDFVVHVNHGIGRYTGMETMEIGGVHQDYMSIIYDNDSKL
FIPVTQVNLLQKYVSSEGKTPKINKLGGTAWAKTKRKVASQVEDIADDLIELYAERERKT
GFPFSEDNEYQHEFDEAFPYTETDDQLRSIKEVKRDMEKDKPMDRLLVGDVGYGKTEVAM
RAIFKAVQDGKQAAILVPTTVLAQQHYETMLERFSDFPVEIGLMSRFRTGQQMKKLTEEL
RKGQVDVVVGTHRILSKDVVFQDLGLLVVDEEQRFGVKHKERLKQLKNEVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPVQTYVMEMNGAVVGEAMKRELARGGQVFYLHNRV
STIDQRAEELQQLVPDARIGIAHGQMSEGQLENVLFEFIQGEFDILVTTTIIETGIDMPN
VNTLLVEDADRMGLSQLYQLRGRVGRSSRIAYAYFMHQPNKILTEVSEKRLQAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGQQQHGFIDSVGFDLYSQMLSEAVARKRGDTAQLQTNVEL
DLSVDAYLPSTYIEDERQKIELYKRIREFASDQDYVELQDELIDRFGDYPQEVSDLLTVG
LLKMYSDRALIETIKRDKQKVAVTFSKEGTQTLPLPEVFKALKKISLKTNMNTNDRLSID
FKLPVRLVDNEWLDSLVLFSKNISEFQMNKKEAVAGKGNE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaacgattacaagttttttatcagaaaaaccctctgttcaaaaggttttctctact
attggacagagacagacgcaattgattaccggaattgctggttctgctagagcattactc
ctttcttctttattgaaagaaaaacaaaagcagatcgtgattatagcacaaaatttatat
catgctaatcaactgatggcagatttaactggtctagttcctgatgaccagttatttgta
ttttcagtcgatgatatgattcatgctgaaatggcgattgcttcgcctgaagctcgggca
gaaagagtgcaagcgctagattatcttttatctgggaaacctgggattgttattatcccg
ctttctggtattagaaaattattgccacccaaagaaatatttcaagcatctcacatcaat
attgaactgggtgccgaaatcgagtttgaccactttgctgaatcgcttataggaatggga
tatagaagagaacaaaaggttgctgctccaggagagtttagtatcaggggaggcattatt
gatgtctatccattgacagaagaaaatcctgtaagaattgagctgtttgatgtagaggtt
gattcattgaggttttttgatgcagatacccagcgctcaatagaaaatgtaagtaaaatt
tctttaatacctgcaacagattttctagtaacaaaagagcaaatgaagccagcagctgaa
aagctgaaaaaagcactatcgagaaatttagcagctctaactgataacgaagctaagcaa
atattgagtaagcaattaaattctgtgattagaggattggaaaccggtgaattgacagat
gatctagtcaaattcagagattttgtgtacgaaaagcattcttctataattgattatatg
gcagatgatgcaattttagcaatggatgaatatccaagaattctagagaaagatgctctt
ttgaatgaagaagaggcagaatgggctacttcccagttgagccagcggctagttttacag
aaacagactttttcaaacgactttagagaagagcttaaaaaaaatcaacatgatactttg
cactttgctttattccagaaaggtatgggaggtttgcgttttgatgcaattcatcctttc
cagtaccgaaacatgcagcaatttttcgggcaaatgcatttgttgaaaacagaaatggat
cgctgggaaaaattaggatacactgtagttgtaatgacagcagatgcagagcgagcagat
aaagtgaatcgtacattactggattttgaaattccgagcatcctttcaggaaatggagaa
atacaagaaaaaaaaatacaagttatttcatcgactgttcaaaacggatttgaattgcct
actgaaaaattggccgttctgactgaaaaagaactatttaatcgtgtcaatcgcaagaaa
gtacgtcgtcagaatataacaaacgctgaaagactaaaaagttatacagaattgaatcca
ggagattttgttgttcacgttaatcacggtatcggaagatacactggaatggaaacaatg
gaaattggtggagtccatcaagactatatgtctatcatatatgataatgactctaaatta
tttattccagtcacccaagtaaacttgctgcagaaatacgtatcttcagaagggaaaacg
cctaagataaataagttaggcgggactgcctgggcaaaaacgaagagaaaagttgcgagc
caagtagaggatattgcagatgatctgattgaattatatgctgaaagagaaaggaaaacg
gggtttcctttttcagaagataatgaatatcagcatgaattcgacgaagcatttccctat
accgaaacagatgaccagcttcgttcaattaaagaagttaaacgagacatggaaaaagat
aaaccaatggatcgtctattagttggagatgttggatatgggaaaaccgaggtcgcaatg
cgggcaatttttaaagctgtacaagacggaaaacaagcggctatattagtaccgacaact
gtcttagcccagcagcattatgaaaccatgttagaacgttttagcgattttccagttgaa
attggattgatgagtcggtttagaactggtcagcaaatgaaaaagttaacagaagaattg
cgtaaaggacaagtagatgtagtagtaggaacccacagaattttatctaaagatgttgtg
tttcaagatttaggcttactagttgttgatgaagagcagcgctttggagttaaacataaa
gaacgattgaagcagttgaagaacgaagttgatgtattaacgctgactgcgactcctatc
cctagaaccttacacatgtctatgcttggagtgagagacttatcagtaattgagactccg
ccggctaatcgctatcctgtccaaacttatgttatggaaatgaatggtgccgtggttggt
gaagcgatgaagagagaactggctcgaggtggacaagttttttatctgcataatcgtgta
agtacgattgaccagagagctgaagaacttcagcagcttgttccggacgcacgtataggt
attgcgcatggccagatgtcagaaggacaactggaaaatgtattattcgaatttattcag
ggagagtttgatatattagttacaacgacgattattgagactgggattgatatgcccaat
gtcaatacacttctagtcgaggatgctgatcgcatgggcttgtcacagctgtatcagcta
agaggtcgtgttggtcgaagcagtcgaattgcttatgcttatttcatgcatcagccgaat
aaaattttaacagaagtcagtgaaaaaagattacaggcaatcaaagattttactgaactt
ggttccggatttaagattgcaatgagagatttatctattcgaggagctggaaatttattg
ggtcagcaacagcatgggtttattgattcagttggattcgatctctattctcagatgtta
tcagaagcagtagctagaaaacgaggagacactgcacagctgcagacgaatgttgaacta
gatctttcagtagatgcgtatcttccaagcacatacattgaagatgaaagacagaaaatc
gagttatataaacgtatacgtgaatttgctagtgaccaggactatgtggaactccaagat
gaattgattgaccgtttcggagattatcctcaagaagtctctgatctgttaacagttgga
ttgcttaaaatgtatagcgatagagcattgattgaaacaattaaacgagataagcaaaag
gtggctgttaccttctccaaagaagggacgcaaactttaccgttaccagaagttttcaaa
gctttgaaaaaaatcagtctgaaaacaaatatgaacacaaatgaccgtttgagtatcgat
ttcaagctgcctgttagattggtggataatgaatggctagattcattagttttgttttcc
aaaaacatttcagaatttcaaatgaataaaaaagaggcagtagcaggtaaaggaaatgaa
tag
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integrated database retrieval system
