KEGG   Massilia violaceinigra: CR152_22400Help
Entry
CR152_22400       CDS       T05157                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mass  Massilia violaceinigra
Pathway
mass03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mass00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CR152_22400 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mass03400]
    CR152_22400 (ligD)
Enzymes [BR:mass01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CR152_22400 (ligD)
DNA repair and recombination proteins [BR:mass03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CR152_22400 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ATQ76953
UniProt: A0A2D2DPR2
LinkDB All DBs
Position
5210386..5212962
Genome map
AA seq 858 aa AA seqDB search
MPDALKVYKSKRNFSITTEPADGGESAPDALTFVIQKHWASRLHYDFRLELDGTMKSWAV
PKGPSYDTRDKRMAVHVEDHPISYSSFEGTIPEKQYGAGKVIIWDKGTWQPLDDPRKGYE
SGNLKFEMHGHKMHGKWVLVRMKGKGEKQEPWLLIKEKDDYTRPAAEFSVVDELPDSVSK
LPMPGAKSVKSKARAAAPEKPASKASSRGMPEAAVKAALPETLSPELATLVDQPPSDPAN
WIFEVKFDGYRLLARIEGKQVQLFTRNGHDWTHKLEPLQKELVKLKLPDGWYDGEIVVHD
ENGRPNFGLLQLAFDGSNTADIVYFLFDAPYFKGYDLRAVPLEARRALLGAALEKGASEA
VRFSSEFGTDPEELVVAACKLGLEGVIGKRRDSRYVTRRSPDWIKLKCGQRQEFVIGGYT
DPQGSRAGIGSLLLGTHDKDGVLQYAGNVGSGFTQSVLRDLKDKLSALDTDESPFPPKAV
AGRKHHWVKPKLIAEVSFAEWTSAGAIRHAVFQGLRSDKPAKEIRREVAKHVEDTMQTQT
TTAAKPKTRAATRKAEPAAPEGTLPATLKVTNGERVIDEQSGTTKIELIRYYALVGPLMM
EHLKGRPVSLVRAPSGVGGELFFQKHAEVGKLPGVKQMDPALDPDHPPMLEVGSASGILS
AAQWNVVEFHTQNAIGKNYETPNRMVFDLDPGEGVDWAAIQEAAQLMHAFLEELGLPCFL
KTSGGKGLHVVVPLKGGLDWDTVKDFSQEVVRHLAATLPDRFAFKSGPKNRVGKIFIDYL
RNGRGATTACAWSARVRPGLGISVPVGWDELAALKSGAQWTVQNVHTRLDHGNEPWAGYA
KAASTLTAAMKKLGFKKD
NT seq 2577 nt NT seq  +upstreamnt  +downstreamnt
atgccggatgcattgaaggtctataagtccaagcgcaatttctcgatcacgaccgaaccg
gccgacggcggcgaatcggcacccgatgcgctgaccttcgtcatccagaagcactgggcc
agccggctgcactacgacttcaggctggaactggacggtaccatgaaaagctgggccgta
cccaaggggcccagctacgacacccgggacaagcggatggcggtccacgtcgaggatcat
ccgatatcgtactccagcttcgagggcacgatcccggaaaagcagtatggggccggcaag
gtgatcatctgggacaagggtacctggcagccgcttgacgatccgcgcaagggctacgag
agcgggaacctcaagttcgagatgcacggccataaaatgcacggcaagtgggtgctggtg
cggatgaagggcaagggcgaaaagcaggagccctggctgctgatcaaggaaaaggacgat
tacaccaggcccgccgccgagttctcggtcgtcgatgagctgcccgacagcgtcagcaaa
ctgcccatgccgggcgccaaatcggtcaaatcgaaggccagggcggcagcgcccgaaaaa
cctgcgtcgaaggccagcagccgtggcatgcccgaggcagcggtcaaggccgcgctgccg
gagacgctttcgccggaactggccaccctggtcgaccagccgccgtcggaccctgccaac
tggatcttcgaggtcaagttcgatggctatcgcctgctggcccggatcgaggggaaacag
gtgcagctgttcacccgcaatggccacgactggacccacaagctcgaacctctgcaaaaa
gaacttgtcaaactcaagctgcccgatggctggtacgacggcgagatcgtggtgcacgac
gagaatggccggcccaacttcggcctgctgcagctggcgttcgatggctccaataccgcc
gatatcgtgtacttcctgttcgatgcaccgtacttcaagggctacgacctgcgcgcggtg
ccgctcgaagcgcgccgcgcgctgctcggcgccgcgctggaaaagggggcgtccgaggcg
gtgcgcttctcaagcgaattcggcaccgatcccgaggaactggtcgtagccgcctgcaag
ctgggactggagggggtgatcggcaagcggcgcgactcgcgctacgtcacgcgccgctcg
cccgactggatcaagctcaaatgcggccagcgccaggaattcgtcatcggcggctatacc
gacccgcaaggttcgcgcgctggcatcggttccctgctgctggggacccacgacaaggat
ggcgtgctgcagtacgccggcaacgtcggcagcggctttacccagtccgtgctgcgcgac
ctgaaagataaattaagcgccctcgataccgacgagagcccgttcccgcccaaggcggtg
gcgggccgcaagcatcactgggtcaagcccaagctgatcgcggaggtcagctttgccgag
tggaccagtgcgggggcaatccgccacgccgtattccagggcctgcgcagcgacaagccg
gccaaggagatccggcgcgaagtggccaaacatgtggaggatacgatgcagacgcaaaca
acgacggcggccaaacccaaaaccagggccgcaaccaggaaggcggaaccggcggcgccg
gaaggcacgctgcctgctaccctgaaggtgaccaatggcgagagggtgatcgatgagcaa
agcggcactaccaagatcgaactgattcgctactacgcgctggtcggcccgctgatgatg
gagcacctgaagggccgcccggtctcgctggtgcgcgcaccgtccggcgtggggggcgag
ctgtttttccagaagcacgcggaggttggcaagctgcccggcgtgaagcagatggacccg
gcgctcgatcccgatcatccgccgatgctggaagtggggagcgcgagcggcattttgtcg
gcggcgcagtggaacgtggtggagttccacacgcagaacgccatcggcaagaactacgaa
acgcccaaccgcatggtgttcgacctggacccgggcgagggcgtcgactgggccgccatc
caggaggcggcgcagctgatgcacgcttttctcgaagaactggggctgccgtgttttctg
aagaccagcggcggcaagggtttgcacgtggtggtgccgctcaagggcggcctcgattgg
gatacggtgaaggatttttcgcaggaagtggtgcgccatctggcggccacgctgccggat
cgctttgcgttcaagagcgggccgaaaaaccgggtcggcaagatcttcatcgattacctg
cgcaacgggcgcggcgccaccacggcatgcgcgtggtcggcacgcgtgcggccgggactg
gggatttcggtgccggttgggtgggatgaactggccgcgctcaagtcgggcgcccagtgg
accgtgcaaaacgtgcacacgcggctagaccacggcaatgaaccgtgggccggctacgcc
aaggccgccagcacgctgacggccgccatgaagaagctgggcttcaagaaggactga

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