KEGG   Massilia sp. WG5: AM586_12130Help
Entry
AM586_12130       CDS       T04122                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
masw  Massilia sp. WG5
Pathway
masw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:masw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AM586_12130 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:masw03400]
    AM586_12130 (ligD)
Enzymes [BR:masw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AM586_12130 (ligD)
DNA repair and recombination proteins [BR:masw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AM586_12130 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RIIa
Motif
Other DBs
NCBI-ProteinID: ALK96897
LinkDB All DBs
Position
5921363..5924035
Genome map
AA seq 890 aa AA seqDB search
MPDALKEYKAKRNFSITSEPAEGGDASKGALTFVIQKHWATRLHYDFRLEIDGTMKSWAV
PKGPSFDNHDKRMAVHVEDHPISYSDFEGTIPPHQYGAGKVIVWDKGTWEPVGDPAKGYA
KGEIKFEIHGHKMHGRWVLVRLRQRAEDRQEHWLLIKENDEYARPASEFSVIDEMPDSVK
DLPMPGAPEDREAARAKLAELKAEARPAKKPAAKAATKTAAKPARRGAMPEGAVKAELPE
TLNAELATLVDGPPERPEEWIFEIKFDGYRMLTRVADKGKDIRLITRNGNDWTDKLRPLQ
QEIKRMKLPDGWYDGEIVVHDENGKPNFNLLQLAFDGSNRAQIVYFIFDMPYFKGHDLRD
VRLDQRRPLLQEVLAAKPSDTVRFSAEFGTDPSQLVVAACQIGLEGVIGKRRDSRYVTRR
SPEWIKLKCGMRQEFVIGGYTDPHGARTGIGSLLLGYYDEKGVLRYAGNCGSGFNGASLR
HMRETLEAIESDENPFPARAVPGRGNHWVKPTLVAEVSFSEWTATDSIRHPVFQGLRKDK
PARSVVREQAKHVQENGQERASMKSEEQAAKATPAPRKRAGTKAAKAEPASGGSGLPATF
KVTHGERVMDKESGVTKLELVEYYALVGELMMAHLKGRPVSLVRAPEGVGGELFFQKHVA
DIRKMPGVGQLDQALDPDHPRMTRIDSVEGLLSCAQWNVVEIHSQNAVEKRYETPDRFVF
DLDPGEGISFAMVQEAAQVVRAFLQELGLNPFLKTSGGKGLHIVVPIKPKLDWDTVKDFS
HAIVTHLAKTLPDRFSDKSGAKNRVGRIFIDYLRNGRGATTVTAWSARTRPGLGISVPVR
WEELADLSSGAHWTVRTVGERLAIGNTPWEDYADSATTLSKAMKALGFKR
NT seq 2673 nt NT seq  +upstreamnt  +downstreamnt
atgccggacgcactcaaggaatacaaggccaagcggaatttttcgatcacgtcggaaccc
gcggaagggggcgacgccagcaagggcgcgctcaccttcgtgatccagaaacactgggcg
accaggctgcactacgatttccgtctcgaaatcgacggcaccatgaagagctgggcggtg
ccgaaaggccccagcttcgacaaccatgacaagcgcatggccgtgcacgtcgaggaccat
ccgatctcctactccgacttcgaaggcacgatcccgccgcaccagtacggcgcgggcaag
gtcatcgtctgggacaaggggacctgggagccggtcggcgacccggccaagggctatgcc
aagggcgagatcaagttcgagatccacggccacaagatgcacggacgctgggtgctggtg
cgcctgcgccagcgcgccgaggaccgccaggagcactggctgctgatcaaggaaaacgac
gagtacgcgcgcccggcctcggaattctcggtcatcgacgagatgccggacagcgtcaag
gatttgccgatgccgggcgcgcccgaagaccgggaggcggcgcgggccaagttggccgag
ctgaaggcggaggccaggccggcgaagaagccggccgccaaggcggcaacgaagacggca
gcgaagccggccagacgcggcgccatgcccgagggcgccgtcaaggccgagctgccagag
accctcaacgccgaactggcgaccctggtcgacggcccgccggaacgtccggaagaatgg
atcttcgagatcaagttcgatggctaccgcatgctgacccgcgtcgccgacaagggcaag
gacatccgcctgatcacccgcaacggcaacgactggaccgacaaactgcgcccgctgcag
caggaaatcaagcgcatgaagctgccggatggctggtacgacggcgagatcgtggtccac
gacgagaacggcaagccgaacttcaacctgctgcagctggccttcgacggttccaaccgc
gcccagatcgtctacttcatcttcgacatgccttacttcaaaggtcatgacctgcgggac
gtgcggctcgaccagcggcgcccgctgctgcaggaagtgctggccgcaaagccgtccgac
accgtgcgcttctcggccgaattcggcaccgacccgagccagctggtggtggcggcctgc
cagatcggcctcgaaggcgtgatcggcaagcgccgcgactcgcgctacgtgacgcgccgc
tcgccggaatggatcaagctgaagtgcgggatgcgccaggaattcgtgatcggcgggtat
accgatccgcacggcgcgcgcaccggcatcggctcgctgctgctcggctactacgatgag
aagggcgtgctgcgctacgccggcaactgcggcagcggcttcaacggcgcgtcgctgcgc
cacatgcgcgagacgctggaagccatcgagagcgacgagaacccgttcccggcgcgcgcc
gtgcccggtcgcggcaaccactgggtcaagccgaccctggtggccgaggtcagcttctcg
gaatggaccgcgaccgattcgatccgccaccccgtgttccagggcctgcgcaaggacaag
ccggccaggagcgtggtgcgcgagcaggccaagcacgttcaggagaatgggcaggagcgc
gcaagcatgaagagcgaggaacaggctgcgaaggcgacgccggcgccgcgcaagcgcgcc
ggcaccaaggccgcgaaggcggagccggcatcgggcggcagcggattgcccgcgactttc
aaagtcacgcacggcgagcgcgtgatggacaaggaaagcggcgtcaccaagctcgaactg
gtcgaatactatgcgctggtcggcgaactgatgatggcgcacctgaaaggccgcccggtg
tcgctggtgcgcgcgcccgagggcgtcggcggcgagctgttcttccagaagcacgtcgcc
gacatacgcaagatgccgggcgtcggccagctcgaccaggccctcgatccggaccacccg
cgcatgacccgcatcgacagcgtcgaaggcctcctgtcctgcgcccagtggaacgtggtc
gagatccacagccagaacgcggtcgagaagcgctacgagacccccgaccgcttcgtgttc
gacctcgacccgggcgagggaatctcgttcgcgatggtgcaggaagcggcccaggtggtg
cgcgccttcctgcaggagctgggcctgaaccccttcctgaagaccagcggcggcaagggc
ctgcatatcgtcgtgccgatcaagcccaagctcgactgggatacggtgaaggacttctcg
cacgccatcgtgacccatctggccaagaccctgccggaccgcttctcggacaagagcggc
gccaagaaccgggtcggccgcatcttcatcgactacctgcgcaacggccgcggcgccacc
acggtcacggcctggtcggcgcgtacgcggccggggctggggatttcggtgccggtgcgc
tgggaggagctggcggacctgagttccggcgcgcactggacggtgcggacggtgggggag
cggctggcgatcgggaatacgccgtgggaggactatgcggacagcgcgaccacgctgagc
aaggcgatgaaggcgctgggattcaaacggtga

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