KEGG   Massilia sp. YMA4: DPH57_08685Help
Entry
DPH57_08685       CDS       T05528                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
masy  Massilia sp. YMA4
Pathway
masy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:masy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DPH57_08685 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:masy03400]
    DPH57_08685 (ligD)
Enzymes [BR:masy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DPH57_08685 (ligD)
DNA repair and recombination proteins [BR:masy03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DPH57_08685 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AXA91225
UniProt: A0A344JDR6
LinkDB All DBs
Position
complement(2052532..2055189)
Genome map
AA seq 885 aa AA seqDB search
MKDSLKTYKAKRNFAITPEPAEGGEEGKDVLTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPEKQYGAGKVIIWDKGTWHPLGDPRQGYR
DGNLKFELRGHKLRGKWVLVRMKRSGEKQEPWLLIKEKDEYVRSADEFSVIDEMPDSVKA
LGMPTDEPLTPQAAAAEETARAHAAPARKRAAVKGEAKAKAKAKAEAAPAAPGVRCALPE
TFAPELATLVDAPPSDPQDWLFEIKFDGYRLLARVDGKDVRLITRNGNDWTHKLEPLRAA
IEKMKLPKGWYDGEIVVHDASGRPNFGLLQQAFDGTRTSNIVYFVFDAPYLDGYDLREVP
LAQRRELLKTVMERAGNDMVRYSAELEAPPAEMVAAACQMGLEGIIGKRRDSTYVSRRSP
DWIKLKCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYGEDGKLHYAGNVGAGFNETTLREI
TAKLKKLASDSNPFAPSKAIEKRAHWVKPTLVAEVTFGEWTGSGSIRHSVFQGLRADKKA
SSVTREKAAHMETLVEGTMQTQSAAKTTKPKAAAKSAPARAPAGLDADSKLPSSLKVTNP
DRLIDPASGTTKIGLVRYYALVADLMLEHLKGRPVALVRAPSGVGGELFFQKHSEVGKLP
GVKQFPQVLDPDHPSMLEVATMQGLLSAAQWNVVEFHTQNAFGKNYEKPNRMIFDLDPGQ
GVSWAQIQEAAQLMRAFLAELGLPAFLKTSGGKGVHVVVPVKPQHDWDTVKGFTKAIVEH
MATTLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTVSAWSARTRAGLGISVPVAWDELAH
LRGGDHWTVATVHDRLDEGNTPWDDYAKSAVSITKAMKQLGYTGA
NT seq 2658 nt NT seq  +upstreamnt  +downstreamnt
atgaaagactccctcaagacctacaaggccaagcgcaacttcgccatcacgccggaaccg
gccgagggcggcgaggagggcaaggacgtgctgacgttcgtcatccagaagcactgggcg
acgcggctgcactacgacttccgcctggagctggacggcaccatgaagagctgggccgtg
ccgaaagggccgagctacgacacgcacgacaagcgcatggccgtgcacgtcgaggaccat
ccgatctcgtacaacgacttcgaaggcacgatcccggagaagcagtacggcgctggcaag
gtcatcatctgggacaagggcacctggcatccgctgggcgacccacgccagggctaccgc
gacggcaacctgaagttcgagctgcgcggccacaagctgcgcggcaagtgggtgctggta
cggatgaagcgctcgggcgagaaacaggagccctggctgctgatcaaggaaaaggacgag
tacgtgcgttccgccgacgagttttccgtcatcgacgaaatgcccgacagcgtcaaggcg
ctgggcatgccgaccgacgagccgttgacgccgcaggccgcggcggccgaggaaacggcg
cgcgcgcatgcggcgccggcgcgcaagagggccgccgtcaagggcgaggccaaggccaag
gccaaggccaaagccgaggccgcgccggcggcgccaggcgtgcgctgcgccttgccggag
acgttcgcgccggagctggccaccctggtggacgcgccgccttcggacccgcaggactgg
ctgttcgagatcaagttcgacggctaccgcctgctggcgcgggtggacggcaaggacgtg
cggctgatcacccgcaacggcaacgactggacccacaagctcgaaccgctgcgcgccgcc
atcgagaagatgaagctgcccaagggctggtacgacggcgagatcgtcgtgcacgacgcc
agcggccggcccaacttcggcctgctgcagcaggcgttcgacggcaccaggaccagcaac
atcgtttacttcgtgttcgatgcgccctatctggatggctacgacctgcgcgaggtgcca
ctggcgcagcggcgcgaattgctcaagaccgtgatggagcgcgccggcaacgacatggtg
cgctactcggccgagctggaggccccgccggccgagatggtggcggcggcctgccagatg
ggcctcgagggcatcatcggcaagcggcgcgactcgacctatgtatcgcgccgctcgccc
gactggatcaagctgaaatgcgcccagcggcaggaattcgtcatcggcggctacaccgac
ccaaaaggctcgcgcgtgggcatcggctcgctgctgctgggttactacggcgaggacggc
aagctgcactacgccggcaacgtgggcgccggcttcaacgagacgaccctgcgcgagatc
acggccaagctgaagaaacttgccagcgacagcaatccgttcgcgccgtcgaaagcgatc
gagaagcgggcgcactgggtcaagcccacgctagtggccgaggtgacgttcggcgaatgg
acgggcagcggctcgatccggcattccgtcttccagggactgcgcgccgacaagaaggca
agcagcgtcacccgcgagaaggcggcccatatggaaacgctggtggagggaaccatgcag
acacaaagtgcggcaaagacgacgaagcccaaggcagcggcaaagagcgcgccagcgcgc
gcgcctgcggggttggacgcggacagcaagctgccctcgtcactgaaggtgacgaacccg
gaccgcctgatcgacccggccagcggcaccaccaagatcggcctggtgcgctactacgcg
ctggtggcggacctgatgctggagcacctgaagggccggccggtcgcgctggtgcgggca
ccgagcggtgtcggcggcgagctgttcttccagaagcattcggaggtgggcaagctgccc
ggtgtgaagcagttcccgcaggtgctcgacccggaccacccgtcgatgctggaagtggcg
acgatgcagggcctgctgtcggcggcgcagtggaacgtggtcgagttccacacccagaat
gcgttcggcaagaactacgagaagccgaaccgcatgatcttcgaccttgacccggggcag
ggcgtgtcgtgggcgcagatccaggaggcggcgcagctgatgcgcgccttcctggccgag
ctgggcctgcccgcgttcctgaagaccagcggcggcaagggcgtgcacgtggtggtgccg
gtcaagccgcagcacgactgggataccgtcaagggcttcaccaaggcgatcgtcgagcac
atggcgacgaccttgccggaccgcttcgcgttcaagagcgggccgaagaaccgggtcggc
aagatcttcatcgactacctgcgcaatggccgcggcgccaccacggtcagcgcgtggtcg
gcccgcacccgtgccggcctgggcatctcggtgccggtggcttgggacgagctggcacac
ctgcgcggcggcgaccactggacggtggccacggtgcacgaccggctcgacgagggcaat
acgccgtgggacgactatgcgaaaagcgccgtcagcattaccaaggcgatgaagcagctg
ggctacaccggcgcgtga

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