KEGG   Massilia armeniaca: C9I28_12940Help
Entry
C9I28_12940       CDS       T05378                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
masz  Massilia armeniaca
Pathway
masz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:masz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C9I28_12940 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:masz03400]
    C9I28_12940 (ligD)
Enzymes [BR:masz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C9I28_12940 (ligD)
DNA repair and recombination proteins [BR:masz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C9I28_12940 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AVR96499
UniProt: A0A2R4CA30
LinkDB All DBs
Position
2961820..2964462
Genome map
AA seq 880 aa AA seqDB search
MKDSLKTYKAKRNFAITPEPAEGGEEGKEALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYNDFEGTIPEKQYGAGKVIIWDKGTWHPLGDPRQGYR
DGNLKFELRGHKLRGKWVLVRMKRSGEKQEPWLLIKEKDEYVRSADEFSVIDEMPDSVKA
LGMPTDEPLSPRAAAAEETAREHAAPARKKSAAAKGKAKAKAVPAAPGVRCALPEMFTPE
LATLVDAPPADPQDWLFEIKFDGYRLLARVDGKDVRLITRNGNDWTHKLEPLRAAIEKMQ
LPKGWYDGEIVVHDQSGRPNFGLLQQAFDGVKTSNIVYFVFDAPYLDGYDLREVPLAQRR
ELLKTVMDRAGNDMVRYSAELEAPPAEMVAAACQMGLEGIIGKRRDSTYVSRRSPDWIKL
KCAQRQEFVIGGYTDPKGSRVGIGSLLLGYYGEDGKLHYAGNVGAGFNETTLREITAKLK
KLASDSNPFAPSKSIEKRAHWVKPTLVAEVTFGEWTSSGSIRHSVFQGLRADKKASSVTR
EKAAHMETLVEGTMQTQSAAKTSKPKAAAKPAPTRAPAGLDADSKLPSSLKVTNPDRLID
PASGTTKIGLVRYYALVADLMLEHLKGRPVALVRAPAGVGGELFFQKHSEVGKLPGVKQF
PQELDPDHPSMLEVATMQGLLSSAQWNVVEFHTQNAFGKNYEKPNRMIFDLDPGQGVAWP
QIQEAAQLMRAFLAELGLPAFLKTSGGKGLHVVVPVKPQHDWDTVKGFTKAIVEHMAATL
PDRFAFKSGPKNRVGKIFIDYLRNGRGATTVSAWSARTRAGLGISVPVAWDELAHLRGGD
HWTVATVHDRLDEGNTPWADYAKSAVSITKAMKQLGYSGA
NT seq 2643 nt NT seq  +upstreamnt  +downstreamnt
atgaaagattccctcaagacctacaaggccaagcgcaacttcgccatcacgccggaaccg
gccgagggtggcgaagagggcaaggaagcgctgacgttcgtcatccagaagcactgggcg
acgcggctgcactacgacttccgcctggagctggacggtacgatgaagagctgggccgtg
ccgaaaggacccagctacgacacgcacgacaagcgcatggccgtgcacgtggaggaccat
ccgatctcgtacaacgacttcgaaggcacgatccccgagaagcagtacggcgccggcaag
gtcatcatctgggacaagggcacctggcacccgctgggcgacccgcggcagggctaccgc
gacggcaacctgaagttcgagctgcgcggccacaagctgcgcggcaaatgggtgctggtg
cggatgaagcgctcgggcgagaagcaggagccctggctgctgatcaaggaaaaggacgag
tacgtacgctcggccgacgagttctcggtgatcgacgagatgcccgacagcgtcaaggcg
ctgggcatgccgacggacgagcctttgagcccgcgggccgcggcggccgaggaaacggcg
cgcgagcatgccgcgccggcgcgcaagaagagcgcggcggccaagggcaaggccaaggcc
aaggccgtgccggcggcgccaggcgtgcgctgcgccttgccggaaatgttcaccccggag
ctggccacgctggtcgacgcgccgccggccgacccacaggactggctgttcgagatcaag
ttcgacggctaccgcctgctggcgcgggtggacggcaaggacgtgcgcctgatcacccgc
aacggcaacgactggacccacaagctcgagccgctgcgcgccgccatcgagaagatgcaa
ctgcccaagggctggtacgacggcgagatcgtcgtgcatgaccagagcggccggcccaac
ttcggcttgctgcagcaggcgttcgacggcgtcaagaccagcaatatcgtctacttcgtg
ttcgacgcgccttacctggacggctacgacctgcgcgaagtaccgctggcgcagcggcgc
gagctgctcaagaccgtgatggaccgcgccggcaacgacatggtgcgctactcggccgag
ctggaggcgccgccggccgagatggtggcggcggcctgccagatgggcctggagggcatc
atcggcaagcggcgcgactcgacctacgtgtcgcgccgctcgcccgactggatcaagctg
aaatgcgcgcagcggcaggaattcgtcatcggcggctacaccgacccgaagggctcgcgc
gtgggcatcggctcgctgctgctgggctattatggcgaggacggcaagctgcattacgcc
ggcaacgtgggcgccggcttcaacgagacgaccttgcgcgagatcacggcaaaattgaag
aaactggccagcgacagcaatccgttcgcgccgtcgaaatcgatcgagaagcgggcgcac
tgggtcaagcccacgctggtggccgaggtgacgttcggcgaatggaccagcagcggctcg
atccggcattccgtcttccagggactgcgcgccgacaagaaggcgagcagcgtcacccgc
gagaaggcggcccatatggaaacgctggtggagggaaccatgcagacacaaagcgcggca
aagacgagcaaacccaaggcagccgcaaagccggcgccaacgcgcgcacccgcagggctg
gacgcggacagcaagctgccgtcgtcgctgaaggtaaccaacccggaccgcctgatcgat
ccggccagcggcaccaccaagatcggcctggtgcgttactacgccctggtggccgacctg
atgctggagcacctgaagggccgcccggtggcgctggtgcgggcacccgccggcgtcggc
ggcgagctgttcttccagaagcattcggaggtcggcaagctgcccggcgtgaagcagttc
ccgcaggagctcgaccccgaccatccgtcgatgctggaagtggcgacgatgcaggggctg
ttgtcgtcggcgcagtggaacgtggtcgagttccacacgcagaacgccttcggcaagaac
tacgagaagcccaaccgcatgatcttcgacctggaccccggccagggcgtggcgtggccg
cagatccaggaagcggcccagctgatgcgcgctttcctggccgagctgggcttgccggcg
ttcctgaagaccagcggcggcaagggcttgcacgtggtcgtcccggtcaagccgcagcac
gactgggacaccgtcaagggcttcaccaaggcgatcgtcgagcacatggccgcgaccctg
ccggaccgcttcgcgttcaagagcgggccgaagaaccgggtcggcaagatattcatcgac
tacctgcgcaacggccgcggcgccaccacggtcagtgcctggtcggcccgcacccgcgcc
ggcctgggcatctcggtgccggtggcctgggacgagctggcacacctgcgcggcggcgac
cactggacggtggccacggtgcacgaccggctcgacgagggcaatacgccgtgggccgac
tatgcgaaaagcgccgtcagcattaccaaggcgatgaagcagctgggttacagcggcgct
tga

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