Pseudoduganella armeniaca: C9I28_15965
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Entry
C9I28_15965 CDS
T05378
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
masz
Pseudoduganella armeniaca
Brite
KEGG Orthology (KO) [BR:
masz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
masz03032
]
C9I28_15965
03400 DNA repair and recombination proteins [BR:
masz03400
]
C9I28_15965
Enzymes [BR:
masz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C9I28_15965
DNA replication proteins [BR:
masz03032
]
Prokaryotic type
DNA Topoisomerases
C9I28_15965
DNA repair and recombination proteins [BR:
masz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C9I28_15965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Ribosomal_L40e
Motif
Other DBs
NCBI-ProteinID:
AVR96981
UniProt:
A0A2R4CBK5
LinkDB
All DBs
Position
complement(3671095..3672327)
Genome browser
AA seq
410 aa
AA seq
DB search
MKSAETTAEENPALPSAMLAADAQAAARAAGLRYVTDGRPGLSRVPNDGAGFRYLAADGK
AVEDEATLGRIKSLAIPPAWTDVWICAQANGHLQATGRDARGRKQYRYHPRWRSVRDEVK
YERMIAFGRALPGIRAAVDKALGLPGLPREKVLATIVYLLEATMMRIGNEEYAKENKSFG
LTTLRNRHVRVDGKEVEFHFRGKSGVWHDVKVADRRLARIIGRIRDLPGQELFQYVDDDG
DRHSIDSSDVNDYLRTITGEDYTAKDFRTWSGTVLAALALQEFEKFDSETQAKKNVVRAI
ESVAKKLGNTPSVCRKCYVHPAVLDAYMDGAELAALRTRAEEELTQDLHALQPEEAAVLA
LLQQRLEREAQQAAMQGKGKGKRAAQPAPARAKPAPRARSAARKVAAAAA
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgcagaaactactgcagaagaaaacccggcgctgcccagcgccatgctggcc
gccgacgcgcaggccgccgcccgtgccgccggcctgcgctacgtgaccgacggccggccc
gggctgtcccgtgtgcccaacgatggcgccggctttcgctacctggccgcggacggcaag
gctgtcgaggacgaggccacgctgggccgcatcaagtcgctggcgattccgccggcctgg
accgacgtgtggatctgcgcccaggccaacggccacctgcaggcgacagggcgcgacgcg
cgcgggcgcaagcaataccgctaccacccgcgctggcgcagcgtgcgcgacgaagtcaag
tacgaacgcatgatcgcgttcggccgcgcgctgccgggcatccgcgcggccgtcgacaag
gcgctgggcttgcccggcctgccgcgcgagaaagtgctggcgacgatcgtctacctgctg
gaggcgacgatgatgcgtatcggcaacgaggaatatgcgaaggaaaacaagtccttcggg
ctgactaccttgcgcaaccgccacgtgcgggtggacggcaaggaggtggagttccacttc
cgcggcaagagcggcgtgtggcacgacgtcaaggtggcggaccggcgcctggcccgcatc
atcggccgcatccgcgacctgccgggccaggagctgttccaatacgtggacgacgacggc
gaccgccattcgatcgactcgagcgacgtcaacgactacctgcgcaccatcacgggcgaa
gactacacggccaaggatttccgcacctggtccggcaccgtgctggcggcgctggccctg
caggaattcgagaagttcgactccgagacgcaggccaagaagaacgtcgtgcgcgccatc
gagtcggtggccaagaagctgggcaacacgccttcggtctgtcgcaagtgctatgtccat
ccggccgtgctggatgcctatatggacggcgccgaactggcggcactgcgcacccgggcc
gaggaggagctgacgcaagacctgcacgcgctgcagccggaggaggcggccgtgctggcg
ctgctgcagcagcgcctggaacgggaggcgcaacaggcggccatgcagggcaagggcaag
ggcaagcgggcggcgcaaccggcgccggcgcgcgcgaagccggcgccgcgggcgcggtcg
gcggcgcgcaaggtggccgcggccgccgcctga
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