Mycobacterium avium subsp. paratuberculosis E1: RC58_12885
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Entry
RC58_12885 CDS
T03787
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mavi
Mycobacterium avium subsp. paratuberculosis E1
Pathway
mavi03030
DNA replication
mavi03430
Mismatch repair
mavi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RC58_12885
03430 Mismatch repair
RC58_12885
03440 Homologous recombination
RC58_12885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mavi03032
]
RC58_12885
03400 DNA repair and recombination proteins [BR:
mavi03400
]
RC58_12885
Enzymes [BR:
mavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RC58_12885
DNA replication proteins [BR:
mavi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RC58_12885
DNA repair and recombination proteins [BR:
mavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RC58_12885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AJK75811
UniProt:
A0A7U6EJR7
LinkDB
All DBs
Position
complement(2839406..2842939)
Genome browser
AA seq
1177 aa
AA seq
DB search
MNHSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATKA
GIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFKL
SSLASFEGQLGKWSRMDAELIAEHADGIIATTGCPSGEVQTRLRLGQDREALESAAKWRE
IFGADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYITRDAAHNHEALLCV
QTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTPRD
RMPVFPVPEGHDQASWLHHEVMAGLRRRFPDGVGQDYIDRAEYEIKVICDKGFPSYFLIV
ADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDIDI
DFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRITKA
LPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAGVHA
CAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIGDALDNI
KANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAVLA
LYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQIMFIAQKV
ASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILPFAGYAFN
KSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPPDVN
ESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKIDISACNKKV
TESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGCTESVFTIK
VPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVPNETQVRVG
GILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHAYSTYGADIADDAVVLINAKVAIR
DDRIALIANELVVPDFSTAQVDRPLAVSLPTRQCTIDKVTALKQVLARHPGTSQVHLRLI
SGDRITTLELDASLRVTPSPALMGDLKELLGPGCLGG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaaccactcgtccttcgtgcacctgcacaaccacaccgagtattcgatgctggacggt
gccgcgaagatcaccccgatgctcgccgaggtggaacggctgggcatgcccgcagtcggg
atgaccgaccacggaaacatgttcggcgccagcgagttctacaacgccgccaccaaggcc
gggatcaagccgatcatcggcgtggaggcctacatcgcgccgggctcccggttcgacacc
cggcggatcctgtggggggatcccagccagaaggccgacgacgtgtccggcagcggctcc
tacacccacctgaccatggtggccgagaacgcggccggcctgcgcaacctgttcaagctg
tcctcgctggcctcgttcgagggccagctgggcaagtggtcgcggatggacgccgagctg
atcgccgaacacgccgacggcatcatcgccaccaccggctgcccctccggggaggtgcag
acccggctgcggctgggccaggaccgcgaggcgctcgagtcggcggccaagtggcgcgag
atcttcggcgccgacaacttcttcctcgagctgatggaccacggcctgtccatcgagcag
cgggtccgcgacggcctgctggagatcggccgcaagctgaacatcccgccgctggccacc
aacgactgccactacatcacccgcgacgccgcgcacaaccacgaggcgctgctgtgcgtg
cagaccggcaagacgctctcggacccgaaccggttcaagttcgacggcgacggctactac
ctcaagtcggccgccgagatgcgccagatctgggacgccgaggtgcccggcgcgtgcgac
tccaccctgttgatcgccgaacgggtgcagtcctacgcggaggtgtggacgccgcgcgac
cggatgccggtcttcccggtgcccgagggtcacgaccaggccagctggctgcaccacgag
gtgatggccgggctgcggcggcggttcccggacggggtcggccaggactacatcgaccgg
gccgaatacgagatcaaggtcatctgcgacaagggttttccgtcctacttcctgatcgtc
gccgacctgatcaactacgcccgctcggtcgacatccgggtggggcccgggcgtggctcg
gcggccggctccctggtggcctacgcgctgggcatcaccaacatcgacccgattccgcac
ggcctgctgttcgagcggttcctcaacccggagcggccgtcggcgcccgacatcgacatc
gacttcgacgaccgtcgccgcggcgagatggtgcgctacgccgccgacaagtggggctcc
gaccgggtcgcccaggtcatcaccttcggcaccatcaaaaccaaagcggcgctgaaggat
tcggcgcgcatccactacggtcaaccgggcttcgcgatcgccgaccggatcaccaaggcg
ctgccgccgccgatcatggccaaggacatcccgctgtccggcatcaccgaccccagccat
gagcggtacaaggaagccgccgaggtgcgcggcctgatcgagaccgaccccgacgtgcgc
accatctaccagaccgcccgcggcctggagggtttgatccgcaacgccggcgtgcacgcg
tgcgcggtgatcatgagcagcgagccgctgaccgaggccatcccgctgtggaagcggccg
caggacggcgccatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctg
aagatggacttcctgggcctgcgcaacctgacgatcatcggcgacgcactggacaacatc
aaggccaaccggggaatcgacctcgacctggagtcggtgccgctggatgacaaggcgacc
tacgagctgctgggccgcggcgacacgctgggggtgttccagctcgacggcggccctatg
cgcgacctgctgcgccgcatgcagcccacggagttcaacgacatcgtcgcggtgctggcc
ctgtaccgtcccgggccgatgggcatgaacgcccacaacgactacgccgaccgcaagaac
ggccgccagccgatcaagccgatccaccccgagctcgaggagccgctgcgcgaaatcctc
gccgagacttacggtttgatcgtctaccaagagcagatcatgttcatcgcccagaaggtg
gcctcctacaccatgggcaaggccgacgcgctgcgcaaggcgatgggcaagaagaagcta
gaggtgctcgaggccgagtacaagggcttctacgagggcatgaccgccaacgggttctcc
gagaaggcggtaaaagccttgtgggacaccatccttccgttcgcggggtatgcgttcaac
aagtcgcacgccgccggctacgggctggtgtcgtactggaccgcgtatctgaaggccaac
taccccgccgaatatatggccgggctgctgacctcggtgggcgacgacaaggacaaggcc
gcggtctatctggccgactgccgcaagctgggcatcacggtgttgccgccggacgtcaac
gagtcgctggtcaacttcgcctcggtcggccaggacatccgcttcgggctgggcgcggtg
cgcaacgtcggcgccaacgtggtcggttcgctgatcaagacccgcaacgagaagggcaag
ttcaccgacttctccgactacctgaacaagatcgacatctcggcctgcaacaagaaggtg
accgagtcgctgatcaaggccggcgcgttcgactcgctcaagcacgcgcgcaagggcctc
ttcctggtacacaccgatgcggtcgattcggtgctgggaaccaagaaggccgaggcgatg
ggccagttcgacttgttcggcggcgacggcggttgcaccgagtcggtgttcaccatcaag
gtgcccgacgacgagtgggaggacaagcacaagctcgcgctggagcgggagatgctgggg
ctctatgtgtccgggcatccgctcaacggggtggcgcatctgctggccgcgcaggtggac
acccagatcccggccatcctggacggcgacgtgcccaacgagacccaggtgcgggtcggc
ggcatcctggcgtcggtcaaccggcgggtcaacaagaacgggatgccttgggcgtcagcg
caattggaggacctcaccggtggcatcgaggtgatgttcttcccgcacgcctactccacc
tacggcgccgacatcgctgacgacgccgtggtgctgatcaacgccaaggtggcgatccgt
gacgaccggatcgcgctgatcgccaatgagcttgtggtgccggacttttccactgcccag
gtggaccggccgctggcggtcagcctgccgacgcggcagtgcaccatcgacaaggtcacc
gcgctcaagcaggtgctggcccgtcatccggggacctcgcaggtgcatctgcggctgatc
agcggcgaccggatcaccacgttggagctggacgcgtcgctgcgggtgacgccgtcgccg
gcgttgatgggcgacctcaaagagctgctcggccccggctgcctcggcgggtag
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integrated database retrieval system
