KEGG   Methanosarcina barkeri 3: MSBR3_1350Help
Entry
MSBR3_1350        CDS       T04533                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mbak  Methanosarcina barkeri 3
Pathway
mbak03030  DNA replication
mbak03410  Base excision repair
mbak03420  Nucleotide excision repair
mbak03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mbak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSBR3_1350
   03410 Base excision repair
    MSBR3_1350
   03420 Nucleotide excision repair
    MSBR3_1350
   03430 Mismatch repair
    MSBR3_1350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbak03032]
    MSBR3_1350
   03400 DNA repair and recombination proteins [BR:mbak03400]
    MSBR3_1350
Enzymes [BR:mbak01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSBR3_1350
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSBR3_1350
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSBR3_1350
DNA replication proteins [BR:mbak03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MSBR3_1350
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MSBR3_1350
DNA repair and recombination proteins [BR:mbak03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSBR3_1350
   NER (nucleotide excision repair)
    Other NER factors
     MSBR3_1350
   MMR (mismatch exicision repair)
    Other MMR factors
     MSBR3_1350
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AKB81928
UniProt: A0A0E3SM57
LinkDB All DBs
Position
complement(1823996..1825702)
Genome map
AA seq 568 aa AA seqDB search
MTSFREFAETCQAIEKISSTIDTTSRVADLLRMVDVEELPIATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSRASGMPVKSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFFEEHPELS
ITEVYNRFKIASEASGKGSQDIKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPADVVEHAFMVTNDLGIVAATAKEGGVEALKHLGIEINRPIKMMLSQISPD
IVADIMEMKEAAIEWKFDGARVQVHKAGNSVTLFSRKLENVTNSLPDLVEIIRKHIKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LIERRKALESCVESSVEDSKSICVDKQVITGDLELIEKIYKEALEAGHEGVMVKNPNSLY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGFGRRANLIGSYTVACYDPETLRYLQVGKVGT
GLTDDQLKELTEMLSGLMEGGEAGGVFAIRPKIVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGKVYSQQLKRL
NT seq 1707 nt NT seq  +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcagaaacctgccaggcaattgaaaaaatctcgagtaca
attgatactacaagtagggttgctgaccttcttagaatggttgatgtcgaagaacttccc
attgcaacccattttattatgagtgaggtttttcctgcctggagtggagagcaattggga
attggtacgagtctgctgtatgtttctctttccagggcctccggaatgccagtaaaaagc
atagaatctcttattcggactactggggatatcggagacacagctcttcttatccttaag
gaaaaaaggaaaaaccaggttactttttcttctttcttcgaagaacatccagagctctca
ataaccgaagtctataatcgttttaaaatcgcttcagaagcctcggggaaaggctcacag
gacattaagataaagaaccttcagttcctctttaattcttcgaccccaagggaagcaaag
tatatttccaggcttgcgcttgaggaactccgtataggcgtcggagaaggtgttgtaaga
gacgctattgcaaaagctttctccgtgcctgctgatgtggttgagcatgcctttatggtt
acgaatgaccttgggatagttgctgcaactgccaaggaaggtggggtggaagccctgaaa
cacctgggaattgaaatcaaccgtccgattaagatgatgctctcacagatcagtcctgat
atagttgccgatataatggaaatgaaggaggctgcaatcgaatggaaattcgacggggca
agagtccaggtccataaggctggaaattcggttacgcttttctcacggaaacttgaaaat
gtaacaaattccctccctgaccttgtagagataatccgcaaacatataaaggccgaatcc
gcaatccttgacggagaagccgttgcagtggacgagaatggtaagcccagagcattccag
gagatccttaaacgtttccggcgcaagtacgacgtggaagaaaaagcccttggtatccct
attcagctcaatctttttgacattatgtacttaaacggaaaaacgctaattgacctgcct
ctgatcgaacggcgaaaagcacttgagtcctgtgttgaaagttcggttgaggattcaaaa
tccatttgcgtggacaaacaggtgataaccggagacctggagcttatagagaagatctat
aaggaagccttagaagccgggcacgaaggagttatggtcaaaaacccgaattcgctttat
tcccctggcaaacgaggcaaaaactggcttaagaaaaagcctcttatggaaactcttgac
cttgtagttgttggggcggaatggggctttggcaggcgcgcaaatctcataggttcctac
acggttgcctgttatgacccagaaaccctgcgttatcttcaggtcggcaaggttggtacg
ggcctgaccgatgaccagctaaaggagcttacagagatgctttccgggctcatggaaggc
ggagaagcaggcggtgtatttgcaatccgaccgaagatagttctggaaatcgcctttgag
gaaatccagaaaagccccaattatgactccggttttgcgcttcgttttccacgttttatc
cgcatccgggacgataaagaccctgaagaagccgatacaatccagagaattggaaaggta
tacagccagcagttgaaaaggctgtaa

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