Methanosarcina barkeri 3: MSBR3_2827
Help
Entry
MSBR3_2827 CDS
T04533
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mbak
Methanosarcina barkeri 3
Pathway
mbak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSBR3_2827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbak03019
]
MSBR3_2827
03016 Transfer RNA biogenesis [BR:
mbak03016
]
MSBR3_2827
Enzymes [BR:
mbak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MSBR3_2827
Messenger RNA biogenesis [BR:
mbak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSBR3_2827
Transfer RNA biogenesis [BR:
mbak03016
]
Prokaryotic type
tRNA degradation factors
MSBR3_2827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
Ald_deCOase
Motif
Other DBs
NCBI-ProteinID:
AKB83405
UniProt:
A0A0E3WXW5
LinkDB
All DBs
Position
complement(3740407..3742260)
Genome browser
AA seq
617 aa
AA seq
DB search
MGISYYFLLINIHIRKVYQILHLSGTMPDMLRGITIDDVTTRDMDDAIWVEITENGGWHV
VVMITDVAKVISKHSELDRLAMSRIETRYYANGNSPMLPRRLADEKLSLWPEESKYVLAV
DIVLGMNLSILETRLLRTVMISEARLSFSDVPRILSDSEHTQHALIKLASQLANDLLTQR
RNLGALAFYDLGRGLVTNEEGSIKQLRRREDTIGYVIIQELMILANMAVAEYAVKNDIPI
LFRNHTARSVTPERVDLMKLLESVTVIPEVNIAAVRHTTYMMLSRAEYGPVILGHFGLNL
GAYTHFTSPIRRYADLVNHQQIRAHVQNEPLPHSKEEILAIASHINLIHLENDKAKSEYM
KEKAYRKAESAILGDRIDSASDTDFELITKFLIRKGDDCPEAYCDAFRRRLGKLPIICAE
LVLLQAPYGKRWTELKRALLEEIATAPHKAVSIFDIAQNILGWQMPVYKVTNTIRGNLPV
FTAQSAIRVNNIEYRSAVYEDLTKKGATQLASVDLLATILGLPVPNLKTKIIDSPASNDE
VTINTSRDPIFALQEYCQAKKLPLPTYSFKAEGPTCKPIFTCTCTFGSSTSTGQAGKKQR
AKRLAAREMIYTLVSEN
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgggcatctcttactattttttactaataaatatacacataaggaaagtataccaaatt
ttgcatctaagtggtactatgccagatatgttaagaggtattacgatcgatgacgtgaca
acccgggatatggatgatgcaatctgggtggaaatcacggaaaacggcggctggcacgtt
gtagttatgatcacggatgtcgcaaaggtaatttccaagcattcagagcttgatcggctt
gcaatgtctcggatcgagaccagatattatgcaaacggcaatagcccgatgttaccccga
cggcttgcagacgagaagctttccctgtggccggaagagtcgaagtatgttcttgccgtg
gatattgtcctcggcatgaatttgtcaatcctcgaaacacggcttttgcggactgttatg
atcagcgaagcccggctatctttttctgatgtcccccgcattctctctgatagcgagcac
acgcagcacgctctcatcaagctcgcaagccagcttgcgaacgaccttttaacgcagcgc
cgcaatcttggagcgctggcattctatgatttggggcgggggctggtgacaaatgaagaa
gggtctataaaacaattgagacgcagggaggataccatcggctatgttatcatccaggag
ctgatgattctcgctaacatggccgtagcagagtacgcggtcaaaaatgacatccctatc
cttttccgtaaccatacagcccgaagtgtcacccctgagcgagtggacttaatgaagttg
ctcgaaagcgtaactgtcatccccgaggtaaacatagctgctgtcagacataccacgtac
atgatgcttagcagagcggaatacggccccgttatcctgggccatttcggactgaacctg
ggtgcatatactcattttacctcacccatccgaaggtatgctgatcttgtgaatcaccaa
cagatccgggctcacgtccagaacgaacccttgccccattccaaagaggagattctggca
attgcatcgcatatcaacctgatacaccttgaaaacgacaaggctaaaagtgagtacatg
aaggaaaaggcatatagaaaagctgagtctgccatcctgggagatcggatagatagtgcg
agcgatacagacttcgagctcatcaccaaattccttatccgcaaaggtgatgactgtccc
gaggcctactgcgatgcattccggagacgccttggcaagctgccgatcatttgtgcggag
ctagtactattgcaagccccttatggcaaaagatggactgaacttaaaagagcattgctg
gaggaaattgcaactgcgcctcacaaggcagtctcgatcttcgacatcgcgcagaatata
ctgggctggcagatgccagtatacaaagtaactaatacgattcgtggtaatttaccggtg
tttactgcccaaagtgccatcagagtaaataatatcgagtaccggtctgctgtatatgaa
gacttgacaaagaaaggagcaactcagctggcatccgtagacctgctagctactatcctg
ggcttaccagttccaaacttgaagaccaagattatagattcgccggccagtaatgacgaa
gtcacgattaatacgtcaagagacccgatttttgccttgcaggagtattgtcaggcaaag
aaacttcccttaccgacttattcgtttaaggctgaaggacctacctgcaaacctattttc
acctgtacctgcacctttggctcctcgaccagcaccggacaggcaggaaaaaagcagaga
gccaaacggctagcggctagagaaatgatatacactttagtgtccgagaattaa
DBGET
integrated database retrieval system
