Mycobacterium tuberculosis variant bovis BCG Mexico: BCGMEX_2454c
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Entry
BCGMEX_2454c CDS
T01727
Symbol
rne
Name
(GenBank) Putative ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mbm
Mycobacterium tuberculosis variant bovis BCG Mexico
Pathway
mbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCGMEX_2454c (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbm03019
]
BCGMEX_2454c (rne)
03009 Ribosome biogenesis [BR:
mbm03009
]
BCGMEX_2454c (rne)
Enzymes [BR:
mbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BCGMEX_2454c (rne)
Messenger RNA biogenesis [BR:
mbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BCGMEX_2454c (rne)
Ribosome biogenesis [BR:
mbm03009
]
Prokaryotic type
rRNA processing factors
BCGMEX_2454c (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
IF2_N
PCB_OB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AET19729
LinkDB
All DBs
Position
complement(2686658..2689519)
Genome browser
AA seq
953 aa
AA seq
DB search
MIDGAPPSDPPEPSQHEELPDRLRVHSLARTLGTTSRRVLDALTALDGRVRSAHSTVDRV
DAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLMLETQETRNADVERPHYMPLFVAP
QPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANRRRRRGRRGRGRGRGEQGGSDGD
PVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNGEDENGSLEAGNRRRRRRRRRKS
ASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQDGGSGSTEIKGIDGSTRLEAKR
QRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRTEPPLPGTRYTQIAVLEDGI
VVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGA
DRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPGASSTGISRKLPDTE
RQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVARLRERWEQIEAKAQETKEKAAGA
AVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTINEYVNSVAPELVSKLTKYESADG
PDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGNL
EQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARDRTRHQ
VSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGILLHADPVDSAAATGRKSEPGARR
GKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAGLSSLAGRGDEESGEPAAELAEQ
AGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLEDLDDEDLDEDLDVEDSDSDDEDS
DEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPRRRVAGRPAGPPIRLD
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
gtgatagacggtgccccaccttcagatccaccagaaccgagccagcatgaggaactgccg
gaccgcctaagagtccattcgctggcacgaacgctgggaaccaccagcaggcgggtgctg
gatgcgctcaccgcgctcgacggacgggtccgcagcgcacattccacggtggatcgcgtc
gatgcggtccgggtgcgcgatctgctggccactcatctcgagactgccggcgtgctggcg
gcctcggtccatgcgcccgaagcgtccgaggaacccgagtcccggctgatgctagagacc
caggagactcggaatgccgacgtggagcggccgcactatatgccgctgttcgtcgcgccc
cagccgattcccgagccgttagcggacgacgaggacgtcgacgatggccccgactacgtc
gccgacgattccgacgctgacgacgaagggcagctagaccggccggcgaaccggcggcga
cgtcgcggccgtcggggtcgcggtcgcggacgcggggagcagggtggatccgacggtgat
ccggttgaccagcaatccgagccccgggcccaacaatttaccagcgcggacgccgccgaa
accgacgacggcgacgatcgagattccgaagataccgaagccggtgacaacggcgaggac
gaaaacggttcgctggaggccggcaatcgtcgccggcgccgccggcgacggcgtaagtcg
gcttctggtgacgacaacgacgctgcgttagagggcccgttgcctgacgatccgcccaac
actgtcgtacacgaacgcgtgccccgcgcgggtgacaaggccggcaactcgcaggatggc
ggctctggctccactgagatcaagggcatcgacggctcgacccgcctggaagccaagcgg
caacgccgccgcgacgggcgcgacgccggccggcgccgcccaccggtgttgagtgaggcc
gagtttctggctcgccgtgaggcggtcgagcgggtgatggtggtgcgcgaccgggtccgc
accgagccaccgctgccgggcacgcggtacacccagattgcggtgctcgaagacggtatc
gtcgtggagcatttcgtgacgtctgcggcctcggcttccctggtgggcaacatctacctg
ggaattgtgcagaacgtgctgccgtcgatggaggcggcgttcgtcgacatcgggcgcggt
cgcaatggagtgctctacgccggtgaagtcaattgggatgcagcggggttgggcggggcc
gatcgcaagatcgagcaggccctcaaacccggcgactatgtcgtggtgcaggtcagcaag
gacccggtagggcataagggcgcgcggctgaccacgcaggtgtcgctggccggtcgattt
ctggtttatgtgccgggcgcgtcgtcgaccgggatcagccgcaagctgcccgacactgaa
cgtcagcggctcaaggagatcctgcgcgaggtggtgccgtctgacgctggggtcatcatc
cgtaccgcgtctgagggcgtcaaagaggacgacattcgcgcagacgtcgctcggctacgg
gaacgctgggagcagatcgaggccaaggcacaagagaccaaggagaaggccgcgggcgct
gcggtggcgctgtacgaagaaccggacgtgctggtcaaggttatccgtgacctgttcaac
gaggacttcgtcggcctcatcgtttccggcgacgaggcttggaacacgatcaatgaatac
gtgaattctgttgctcccgaattggtttcgaagttgaccaagtacgagtccgctgacggg
ccggatggccagtccgcgccggacgtcttcacggtgcaccgcattgacgagcagctggcc
aaagcgatggaccgcaaggtgtggttgccgtcgggcgggacgctggtgatcgaccggacc
gaagccatgacggtcattgacgtcaacaccggtaaattcaccggagccgggggcaacctc
gagcagacggtcaccaagaacaatctggaagcggccgaggagatcgtgcgccagctgcgg
ctgcgcgatatcggcggcatcgtggtcatcgacttcatcgacatggtgctggagtccaac
cgcgacttggtgttgcgccggttgaccgagtcgctggcccgcgatcgcacccgccaccag
gtgtccgaggtgacgtcgctggggctggtgcagttgactcgcaagcggttgggaaccgga
ctgatcgaagcgttctccacatcgtgtccgaactgcagtggccgcgggatcctgctgcac
gccgacccggtcgattcggccgcggcgactgggcgaaagtctgagcccggtgctcggcgg
ggcaagcgatcgaaaaagagccggtccgaagagtccagtgataggagcatggtcgccaag
gtccccgtgcacgctcccggtgagcatcccatgttcaaggcgatggcagcgggcttgtcc
tcgctggctggtcgcggtgacgaggaatccggggagcccgctgccgaactcgccgagcag
gccggcgatcaaccgcccactgacctcgacgacaccgcccaagcggacttcgaggacacc
gaggacaccgacgaagacgaggacgagctcgacgccgacgaggacctcgaggacctcgac
gacgaggacctcgacgaggatctcgacgttgaagactccgattccgacgacgaagactcc
gacgaagacgccgccgatgccgacgtcgacgaggaggatgcagccggcttggacggttcc
ccgggcgaagtcgacgtccccggtgtcacggagctggcccctacccgtccacgtcggcgc
gttgcgggccggccggccggcccaccaatccgcctagactga
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