Monosiga brevicollis: MONBRDRAFT_15585 Help Entry MONBRDRAFT_15585  CDS       T01042                                  Name (RefSeq) hypothetical protein   KO K03010   DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Organism mbr  Monosiga brevicollis Pathway mbr03020   RNA polymerase mbr03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:mbr00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     MONBRDRAFT_15585   09124 Replication and repair    03420 Nucleotide excision repair     MONBRDRAFT_15585  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:mbr03021]     MONBRDRAFT_15585    03400 DNA repair and recombination proteins [BR:mbr03400]     MONBRDRAFT_15585 Enzymes [BR:mbr01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      MONBRDRAFT_15585 Transcription machinery [BR:mbr03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      MONBRDRAFT_15585 DNA repair and recombination proteins [BR:mbr03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       MONBRDRAFT_15585 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 Motif Other DBs NCBI-GeneID:  5889632 NCBI-ProteinID:  XP_001744279 JGI:  15585 UniProt:  A9UUX4 LinkDB All DBs AA seq 1166 aa AA seqDB search DDDADIDNWDEACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQY LSNEIEEPPKHTISFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITHTVE QKNPETGEVTTTPALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEK VLIAQEKMAGNTVYVFEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKGRAT FGRVIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDEAFVV QTREVALDLIGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYMVH RTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRNHKFM VITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLNSPID RTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLGASGL DYLDRLPSRSAIKTATKVFVNGNWVGIHSHPDELVTTMRQYLLDAAHSVASEVSIFRNIR EREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRNDQMSWTHLVQRGVVEYID VNEEETTMIAMDQGTLEETSYCNTYTHCEIHPSMILSICASIIPFPDHNQSPRNTYQSAM GKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMNYLRFAELPAGINAIVGIMTYTGY NQEDSVIMNRYSVERGLFRSVFYRSYAASEHSERGEIIKIDKPSRENCIGMRRANYDKLE DDGIVAPGIRVSGDDAIVGRLLELPEATRQASGGRFEKRDKSLFLRSSESGIIDGVMISV NQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHA IPSRMTIGHLIECLLGKSASHSGTIGDATPFTKVNVTDVADILEGYNFQRYGNEVMYNGF TGRKMQAQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMEGRSRDGGLRFGEMERD CMIAHGAAQFLRERLFEVSDPYSLHVCDVCGLPCVAKLEKNEFECTRCRNSTRVSRIRLP YACKLLFQELMTMSVVPRMMTDDSHG NT seq 3501 nt NT seq  +upstreamnt  +downstreamnt gatgatgatgccgacattgacaactgggatgaggcttgctgggaagtcatcaacgcatac tttcgcgaaaagggtctggttcgccagcagctggactcgtttgaccactttatcacctac acagtgcagaaaattatcaagaattctcctccgatcgaagtgcagggtcgcttgcagtac ctctccaacgagattgaggagccgccgaagcacaccatctcttttgggcaggcaggcttt gcgctgcctcaacacaaagaggaggatggcaactacgatcatgtgttcccgaacgattgt cgcttgcgcaacctgacctatcagtccttgatgcaatgcgagatcacacacaccgtcgag cagaagaatcccgagacaggcgaggtcaccaccacccccgctctcctgggcaaggtaccc atgatgctgcgcagcaagtactgcaccttgaacaaaatggagaccttccgtgacttttac gatatcaacgagtgcccgcttgatcctggaggctactttatcatcaacgggtccgagaag gtcttgattgctcaggagaaaatggcaggaaatacggtctacgtgtttgagaagaaggat tccaagcacatgtttgttacggaaatgcgcagtattgtcgaggacagcaaccgtcctacc agcaccatgatggtcaagatgctgcgcggtggaagcggcggtaccaagggacgtgccaca tttggccgagtgattcatgccagcttgccatacatccgacaggacattcccgttgtggtt ctctttcgtgctcttggatttgaggacgatcgtagcatcctcgagcacatcatttacgat tttgacgacatggaaatgatggaacttctcaagccttcactggatgaggcctttgtggtg cagacccgggaggtcgcgcttgacctgattggtcgccgcagtatggctgcggttggcatg tccaaggacatgcgtgtgcgctttgcacgggatattctccaaaaggagatgctgccacat attggcgtcggccctcagtgcgagcaagccaaggcattcttcctgggctacatggtgcac cgcactttgcaagccgcgctgcgccgccgcgagctggacgaccgtgaccactacggcaac aagcgtctggacctggcaggctcgctcgtggcctacttgttccgcacactgttcaagcag cttaccaagaagctgacgcgcaaggtcacggacttggtcaaccgcaatcacaagttcatg gtcattaccttgcttgacgttgagattctggggtcgggtttgcgttactctctggccaca ggcaactggggtgaccagaagaaggcacacgaagcccgagcgggtgtttctcaagtgttg aatcggttgacgtttgcgtcaacgttgtcacacttgcgtcgtctcaactcgcccattgac cgcacgggcaagattgccaagcctcgccaactgcacaacacccattggggctacatttgc cctgctgaaacccccgaggggcacgccgttggtctggtcaagaacctctcgctcatggcc tcgttgaccgtcggctcggacgatacccctgtccatgatctgctgggcgccagcggcctt gattacctcgatcgcttgccgtcacgctctgccattaaaactgcaacaaaggtgtttgtc aacggcaactgggtgggcattcacagccacccggatgaattggtcaccacaatgcgacag tacctgttggatgcagcccactcggttgcttccgaggtgtccatcttccgcaacattcgc gagcgcgaggtccacattgtcaccgattcgggccgtaccactcgtcctctgctgatcgtg aacaaggacgacgccaatcggtgccgctttgcgctgaagaactcgcatgtcatggcactg cgcaacgatcaaatgagctggacccacctcgtgcagcgcggtgtcgtcgagtatattgac gtcaacgaagaggaaacaaccatgattgccatggaccagggcacgttggaggagacgagc tactgcaacacgtacacgcactgcgagattcacccgagcatgattctgagcatttgtgca tccatcattcctttcccagatcacaaccagagtccgcgtaatacctaccagtcggccatg ggtaagcaggccatgggcgtctatattaccaactttcatgtgcggatggacacgctggca cacgtgctgtactaccctcaacggcccctcgttcaaacgcgctcaatgaactacttgcgg tttgccgagctgcctgctggcattaacgcaatcgtgggcatcatgacctacactggttat aaccaggaggattcggtcattatgaaccgttactcggtggagcgtggtcttttccgatcc gtcttttaccgttcatatgcggcatcagagcactcggagcgcggcgagattatcaagatt gacaagccgagccgcgaaaactgcattggcatgcgtcgtgcaaactacgacaagctggaa gatgatggcattgtcgcgccggggatccgcgtgagcggagatgacgccattgtgggtcgt ttgctggagctgcccgaggcgacgcgccaagcatcgggtggacgctttgagaagcgtgac aagagcttgtttttgcgcagcagtgagagtggtatcatcgatggcgttatgatcagcgtc aaccagaagggcgagaagtttgtcaagattcgcgtccgctcggtccgcacgccgcaaatt ggtgataagtttgccagtcgtcacggacagaagggtacttgtggcatgcaatacgcgcaa gaggacatgccgtttgccgcttcgggtgtggtgccggacattatcgtcaaccctcatgcc attcccagtcgtatgaccattggtcacttgattgagtgtctgcttggaaagtctgcctcg cactcgggtaccattggtgacgccacgcccttcaccaaggtcaacgtgacggatgttgct gatattctggagggctacaatttccagcgctatggtaacgaggtcatgtacaacggcttc accggccgaaagatgcaggcccaagttttcctgggtcccacttactaccagcgcctcaag cacatggtcgacgacaagatccatgcccgcgcccgtggcccactgcagaacttgactcgt cagcccatggagggtcgctctcgcgatggcggccttcgctttggagagatggagcgtgat tgcatgattgcccatggcgctgcccagtttctgcgcgaacgtctctttgaggtctcagat ccctacagcttgcacgtctgcgatgtctgtggcctgccttgtgtggccaagttggaaaag aacgagtttgagtgcacacgctgccgcaactcaactcgggtttcgcgcattcgtttgccg tacgcttgcaaactgctgttccaggagctcatgaccatgtcggtggtgccgcgcatgatg acggacgatagtcatggctaa

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