KEGG   Marinobacter sp. BSs20148: MRBBS_3653Help
Entry
MRBBS_3653        CDS       T02323                                 

Gene name
ligA
Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mbs  Marinobacter sp. BSs20148
Pathway
mbs03030  DNA replication
mbs03410  Base excision repair
mbs03420  Nucleotide excision repair
mbs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mbs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MRBBS_3653 (ligA)
   03410 Base excision repair
    MRBBS_3653 (ligA)
   03420 Nucleotide excision repair
    MRBBS_3653 (ligA)
   03430 Mismatch repair
    MRBBS_3653 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbs03032]
    MRBBS_3653 (ligA)
   03400 DNA repair and recombination proteins [BR:mbs03400]
    MRBBS_3653 (ligA)
Enzymes [BR:mbs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MRBBS_3653 (ligA)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MRBBS_3653 (ligA)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MRBBS_3653 (ligA)
DNA replication proteins [BR:mbs03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MRBBS_3653 (ligA)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MRBBS_3653 (ligA)
DNA repair and recombination proteins [BR:mbs03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MRBBS_3653 (ligA)
   NER (nucleotide excision repair)
    Other NER factors
     MRBBS_3653 (ligA)
   MMR (mismatch exicision repair)
    Other MMR factors
     MRBBS_3653 (ligA)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: AFP32589
UniProt: M1FJJ3
LinkDB All DBs
Position
complement(3817778..3818653)
Genome map
AA seq 291 aa AA seqDB search
MFVISWMKRLSSGLLASMALMTAGAIAAPASVPLANVYQQGAPLADYWVSEKLDGVRAYW
DGERLWSRRGNPFQAPDWFVSDFPPQPLDGELWLGRGHFAQLSGIVRTVRPVDADWRSVR
FMVFDLPLADQTFDQRLPQLRELVSQAGSPYLALVEQQRPGNHQQLMAHRDKVIAVGGEG
LMLRRGASVYQAGRSDDLLKVKRFDDAEAIVVGILPGKGKYQGLMGALRVRLADNRELRI
GSGFSDAERIDPPPAGSVITFKYSGHTATGLPRFASFMRVRNDEPKAVAVP
NT seq 876 nt NT seq  +upstreamnt  +downstreamnt
atgtttgttatttcatggatgaagcgcctgagttcaggcttattggcaagcatggcgctg
atgaccgctggtgcaatcgctgcgccagcaagcgttccgctggccaatgtgtatcagcaa
ggtgcgccgcttgcggattattgggtaagtgaaaaactggatggagtgcgggcttattgg
gacggtgaacgtctgtggtcccgccgcggtaatccgtttcaagcgcctgactggtttgtc
agcgatttcccgccgcagccgttagacggcgagctgtggctggggcgcggccattttgca
caactttccggcattgtgcgcactgttcgtccagtagatgcggattggcgttctgtgcgt
tttatggtgttcgatttgccgttggccgaccagacatttgaccaacgtcttccgcagttg
cgcgagttggtcagtcaagcgggttcaccctacctggccttggttgagcagcaacggccc
ggaaaccatcagcagctgatggctcatcgggataaggtgattgctgtcggtggcgaaggg
ctgatgctgcgccgtggcgctagtgtctatcaggctggccgctcggatgacttgttgaaa
gtgaagcgctttgacgatgctgaggcgatcgttgtgggcattctgccgggcaagggcaaa
tatcagggcttgatgggcgcgctgcgggtgcggctggccgataaccgtgagcttcgcatt
ggtagcggcttcagcgatgctgagcgtatagatccaccgccggcgggcagtgttattacc
ttcaaatattccggccacaccgccaccggcctgccacggtttgccagttttatgcgagtt
cgaaatgatgaaccaaaggcggtagctgtgccatag

DBGET integrated database retrieval system