Mus caroli (Ryukyu mouse): 110284117
Help
Entry
110284117 CDS
T05910
Gene name
Tbp
Definition
(RefSeq) TATA-box-binding protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03022
Basal transcription factors
mcal05016
Huntington disease
mcal05017
Spinocerebellar ataxia
mcal05165
Human papillomavirus infection
mcal05166
Human T-cell leukemia virus 1 infection
mcal05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110284117 (Tbp)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
110284117 (Tbp)
09164 Neurodegenerative disease
05016 Huntington disease
110284117 (Tbp)
05017 Spinocerebellar ataxia
110284117 (Tbp)
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
110284117 (Tbp)
05165 Human papillomavirus infection
110284117 (Tbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110284117 (Tbp)
03021 Transcription machinery [BR:
mcal03021
]
110284117 (Tbp)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
110284117 (Tbp)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110284117 (Tbp)
RNA polymerase III system
TFIIIB
110284117 (Tbp)
RNA polymerase I system
SL1/TIF-1B
110284117 (Tbp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
EPL1
Spt20
TFIIA
Cnd2
Presenilin
Tombus_movement
Motif
Other DBs
NCBI-GeneID:
110284117
NCBI-ProteinID:
XP_021005408
Ensembl:
MGP_CAROLIEiJ_G0021096
UniProt:
A0A6P5NRK1
LinkDB
All DBs
Position
17
AA seq
318 aa
AA seq
DB search
MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQ
QQQQQQQQQQQQAVATAAASVQQSTSQQPTQGASGQTPQLFHSQTLTTAPLPGTTPLYPS
PMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVI
MRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGS
CDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEI
YEAFENIYPILKGFRKTT
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaccagaacaacagccttccaccttatgctcagggcttggcctccccacagggcgcc
atgactcctggaattcccatcttcagtccaatgatgccttacggcacaggacttactcca
cagcctattcagaacaccaacagtctctctattttggaagagcaacaaagacagcagcag
cagcagcaacagcagcagcagcagcaacaacagcaggcagtagcaactgcagcagcctcc
gtacagcaatcaacatctcagcaacccacacagggcgcctcaggccagaccccacaactc
ttccattctcaaactctgaccactgcaccgttgccaggcaccacccccttgtacccttca
ccaatgactcctatgacccctatcactcctgccacaccagcttctgagagctctgggatt
gtaccgcagcttcaaaatattgtatccaccgtgaatcttggctgtaaacttgacctaaag
accattgcacttcgtgcaagaaatgctgaatataatcccaagcgatttgctgcagtcatc
atgagaataagagagccacggacaactgcgttgattttcagttctggaaaaatggtgtgc
acgggagccaagagtgaagaacaatccagactagcagcaagaaaatatgctagagttgtg
cagaagttgggcttcccagctaagttcttagacttcaagatccagaacatggtggggagc
tgtgatgtgaagttccccataaggctggaaggccttgtgttgacccaccagcagttcagt
agctatgagccagaattatttcctggattaatctacaggatgatcaaacccagaattgtt
ctccttatttttgtttctggaaaagttgtattaacaggtgctaaagttagagcagagatt
tatgaagcatttgaaaacatctaccccatcttaaagggattcaggaagaccacatag
Mus caroli (Ryukyu mouse): 110289978
Help
Entry
110289978 CDS
T05910
Gene name
Tbpl2
Definition
(RefSeq) TATA box-binding protein-like protein 2 isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03022
Basal transcription factors
mcal05016
Huntington disease
mcal05017
Spinocerebellar ataxia
mcal05165
Human papillomavirus infection
mcal05166
Human T-cell leukemia virus 1 infection
mcal05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110289978 (Tbpl2)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
110289978 (Tbpl2)
09164 Neurodegenerative disease
05016 Huntington disease
110289978 (Tbpl2)
05017 Spinocerebellar ataxia
110289978 (Tbpl2)
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
110289978 (Tbpl2)
05165 Human papillomavirus infection
110289978 (Tbpl2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110289978 (Tbpl2)
03021 Transcription machinery [BR:
mcal03021
]
110289978 (Tbpl2)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
110289978 (Tbpl2)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110289978 (Tbpl2)
RNA polymerase III system
TFIIIB
110289978 (Tbpl2)
RNA polymerase I system
SL1/TIF-1B
110289978 (Tbpl2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
110289978
NCBI-ProteinID:
XP_021012080
Ensembl:
MGP_CAROLIEiJ_G0023231
UniProt:
A0A6P5PGC1
LinkDB
All DBs
Position
2
AA seq
350 aa
AA seq
DB search
MVGSLIMEEDIYLDLFLDPYTIQDDFPPAMSQLLSPGVPLDMHSLPSNPETVFHPHLGGI
KKASTDFSSVDLSFLPDELTQENRDQTVSGNKLASEESCRTRDRQSQLKLPDEHGSELNL
NSNTSPDTQSCLCFDDADSNQPSPETPNSNALPVALISSMMPMNPVPGFSGIVPQLQNVV
STANLACKLDLRKIALNAKNTEYNPKRFAAVIMRIREPRTTALIFSSGKVVCTGAKSEEE
SRLAARKYARVVQKLGFPVRFFNFKIQNMVGSCDVKFPIRLEILALTHRQFSSSYEPELF
PGLIYKMVKPQVVLLIFASGKVVLTGAKERSEIYEAFENMYPILESFKKV
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggtaggctctctcatcatggaggaggacatatacctggacctcttcctggatccttat
accatccaggatgactttcctccagctatgtctcaactgctcagcccaggagtgccttta
gacatgcactcacttccatctaatccagagactgtgtttcatccacatcttggtggcatc
aaaaaggcatccactgacttttcatctgtggatctaagcttcttaccagatgaacttacc
caagaaaatagagaccaaactgtcagtggaaacaagctggcaagtgaggaaagctgtagg
actcgagatcgacaaagtcagttgaagttgcccgatgaacatggcagtgagctgaacttg
aatagcaacacttcaccagatacccagtcatgtctgtgctttgatgatgctgactccaac
cagccctctccagaaacaccaaactccaatgccttacctgtggcattgatatcatccatg
atgccaatgaaccctgttccaggattttctggaattgtgcctcaattacagaatgtagtt
tctactgcaaatctggcctgtaaattggacctgagaaaaatagccctgaatgccaaaaac
acagaatataacccaaagaggtttgctgcagtaataatgaggatccgagagccaaggaca
acagccctcatatttagctctgggaaagtggtctgtacaggagccaaaagtgaagaggag
tctcggctggcagcgagaaagtatgctcgtgtggtgcagaagctcgggttccccgtcaga
ttcttcaattttaaaattcagaacatggttggaagctgtgatgtgaaatttcccatcagg
ctggagattttggcactaacccatcggcagttcagtagcagttatgaacctgaacttttc
cctggccttatttataagatggtaaaaccacaggttgtgttgctaatctttgcatctgga
aaagttgtgttaacaggtgccaaagagcgttctgagatctatgaagcatttgaaaacatg
tatcctattctagaaagttttaagaaagtctga
Mus caroli (Ryukyu mouse): 110303300
Help
Entry
110303300 CDS
T05910
Gene name
Tbpl1
Definition
(RefSeq) TATA box-binding protein-like protein 1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03022
Basal transcription factors
mcal05016
Huntington disease
mcal05017
Spinocerebellar ataxia
mcal05165
Human papillomavirus infection
mcal05166
Human T-cell leukemia virus 1 infection
mcal05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110303300 (Tbpl1)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
110303300 (Tbpl1)
09164 Neurodegenerative disease
05016 Huntington disease
110303300 (Tbpl1)
05017 Spinocerebellar ataxia
110303300 (Tbpl1)
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
110303300 (Tbpl1)
05165 Human papillomavirus infection
110303300 (Tbpl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110303300 (Tbpl1)
03021 Transcription machinery [BR:
mcal03021
]
110303300 (Tbpl1)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
110303300 (Tbpl1)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110303300 (Tbpl1)
RNA polymerase III system
TFIIIB
110303300 (Tbpl1)
RNA polymerase I system
SL1/TIF-1B
110303300 (Tbpl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
110303300
NCBI-ProteinID:
XP_021030034
Ensembl:
MGP_CAROLIEiJ_G0015168
UniProt:
A0A6P7RFV6
LinkDB
All DBs
Position
10
AA seq
186 aa
AA seq
DB search
MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
SRKEIL
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagacagtgatgttgcattggacattttaattacaaatgtagtctgtgttttt
agaacacgatgccatttgaacttaaggaagattgctttggagggagcaaatgtaatttat
aagcgtgatgttgggaaagtattaatgaagcttagaaaacctagaattacagctacaatt
tggtcctcaggaaaaattatttgcactggagcaacaagtgaagaagaagctaaatttggt
gccagacgtttagcccgtagtctgcagaaactaggttttcaggtcatcttcacagacttt
aaggtggtgaatgttttggcagtgtgtaacatgccctttgagatccgtttgccagaattt
acaaagaacaatagacctcatgccagctatgaacctgaacttcatcctgccgtgtgctat
cggataaagtctctaagagctacattacagatattttcaacaggaagtatcacagtgaca
gggcccaatgtaaaggctgtggcgactgccgtggaacagatctacccgttcgtgtttgaa
agcaggaaggagattttataa
DBGET
integrated database retrieval system
