Mus caroli (Ryukyu mouse): 110285616
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Entry
110285616 CDS
T05910
Symbol
Trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcal03016
]
110285616 (Trub1)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
110285616 (Trub1)
Transfer RNA biogenesis [BR:
mcal03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
110285616 (Trub1)
Prokaryotic type
110285616 (Trub1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
110285616
NCBI-ProteinID:
XP_021007556
Ensembl:
MGP_CAROLIEiJ_G0023100
UniProt:
A0A6P5P589
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All DBs
Position
19:53927054..53965913
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AA seq
338 aa
AA seq
DB search
MAAAEAEVVSPLIVDTAPDTSGTAAASVAASVAEAARTESQAPASKAALAAKLMSLSGVF
AVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWNKRQKQTLKVGHGGTLDSAAQGVLVVGI
GRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITREDIEGILQKFTGN
IMQVPPLYSALKKDGQRLSTLMKKGKVVEAKPARPVTVHSISLLKFQPPFFTLDVECGGG
FYIRSLVSDIGKELSSCASVLELTRTKQGPFTLAQHALPEDRWTIDDIEQSLERCTSLLP
EELTFKKLKSDNSSDQVISCGYITLRETKREDDAVKTL
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcagaggcagaggtggtttcacccctgattgtggacacagctcctgacact
tcaggaacagccgcggcctctgtagctgcatcggtggcggaagcggccaggaccgaatcg
caagccccggcctccaaggccgccctggctgctaagctcatgtcgctgagcggcgtgttc
gccgtgcacaagcccaaagggcccacttcagccgagctgctgaaccggctgaaggagaag
ctgctggcagaagctggaatgccttctccagaatggaacaagaggcaaaagcagacattg
aaagtcggacacggagggacgctggacagtgcagcacaaggtgttctggtggtggggatt
ggaagaggaacaaaaatgttgaccagtatgttatcggggtccaagaggtatatcgccatc
ggagaactggggaaagctacggacaccctggattctactgggaaggtaacagaagagaag
ccgtatgataaaataacacgagaagatatcgaaggcattctgcagaagtttactgggaat
ataatgcaagtacccccgctctattctgcgctgaagaaggatgggcagagactctcaaca
ctaatgaagaaaggcaaggtggtggaggccaaaccggcccggcccgtgactgtccacagt
atctccctcctgaagttccagcctccgttcttcacgctggatgttgaatgcggaggaggc
ttttacatccgaagcctggtcagtgacattggcaaagagctctcttcctgtgccagcgtg
ctggagctgactcgcaccaaacaggggcccttcacacttgcacagcacgccctccccgaa
gacaggtggaccatcgatgacatcgaacagtccctcgagcgctgcacgtctcttctgcca
gaggagctgacgtttaaaaaactaaaatctgacaactccagtgaccaggttataagctgt
ggatatataactctcagggagacaaagagagaagatgacgcagttaagacactttga
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