Mus caroli (Ryukyu mouse): 110289943 Help Entry 110289943         CDS       T05910                                  Gene name Traf1 Definition (RefSeq) TNF receptor-associated factor 1   KO K03172   TNF receptor-associated factor 1 Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04064   NF-kappa B signaling pathway mcal04210   Apoptosis mcal04668   TNF signaling pathway mcal05200   Pathways in cancer mcal05202   Transcriptional misregulation in cancer mcal05203   Viral carcinogenesis mcal05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09130 Environmental Information Processing   09132 Signal transduction    04064 NF-kappa B signaling pathway     110289943 (Traf1)    04668 TNF signaling pathway     110289943 (Traf1)  09140 Cellular Processes   09143 Cell growth and death    04210 Apoptosis     110289943 (Traf1)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     110289943 (Traf1)    05202 Transcriptional misregulation in cancer     110289943 (Traf1)    05203 Viral carcinogenesis     110289943 (Traf1)   09162 Cancer: specific types    05222 Small cell lung cancer     110289943 (Traf1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF_BIRC3_bd HypA Motif Other DBs NCBI-GeneID:  110289943 NCBI-ProteinID:  XP_021012022 Ensembl:  MGP_CAROLIEiJ_G0023473 UniProt:  A0A6P7QWR6 LinkDB All DBs Position 2 AA seq 409 aa AA seqDB search MASSSAPDENEFQFGCPPAPCQDPSEPRVLCCTACLSENPRDDEDRICPKCRADNLQPVS PGSPLTQEKVHPDVAEAEIMCPFAGVGCSFKGNPQSMQEHEATSQSSHLYLLLAVLKEWK SSPGSNLGSAPMALERNLSELQLQAAVEATGDLEVDCYRAPCCESQEELALQHLVKEKLL AQLEEKLRVFANIVAVLNKEVEASHLALAASIHQSQLDREHILSLEQRVVELQQTLAQKD QVLGKLEHSLRLMEEASFDGTFLWKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCL RLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLS SASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVDTSA NT seq 1230 nt NT seq  +upstreamnt  +downstreamnt atggcctccagctcagcccctgatgaaaacgagtttcaatttggttgcccccctgctccc tgccaggacccatcggagcccagagttctctgctgcacagcctgtctctctgagaaccca agagatgatgaggatcggatctgtcctaaatgcagagcagacaacctccaacctgtgagc ccaggaagccctctgactcaggagaaggttcaccctgatgtagctgaggctgaaatcatg tgtccctttgcaggtgttggctgttccttcaaggggaacccacaatccatgcaggagcat gaggctacctcccagtcctcccacctatatctgctgctggcggtcttaaaggagtggaaa tcctcaccaggctccaacctagggtctgcacccatggcactggagcggaacctgtcagag ctgcagcttcaggcagctgtggaagcgacaggggacctggaggtagactgctaccgggca ccttgctgtgagagccaggaagaactggccctgcagcacttggtgaaagagaagctgctg gctcagctggaggagaagctgcgtgtgtttgcaaacatcgttgctgtcctcaacaaggaa gtggaggcttcccacctggcactggccgcctccatccaccagagccagttggaccgagag cacatcctgagcttggagcagagggtggtggaattacagcaaaccctggcacaaaaagac caggtcctgggcaagcttgagcacagtctgcgactcatggaggaggcatcctttgatggt accttcctgtggaagatcaccaatgtcaccaagcggtgccacgagtcagtgtgtggccgg acagtcagcctcttctctccagctttctacactgccaagtatggttacaagttgtgcctg cgcttgtacctgaacggggatggctcaggcaagaagacccacctgtccctcttcatcgtg atcatgagaggagaatatgatgctctcctgccctggcctttccggaacaaggtcaccttt atgctacttgaccagaacaaccgagagcatgctattgatgccttccggccagatctgagc tcagcctccttccagcggccacagagtgagaccaacgtggccagcggctgcccactcttc ttccccctcagcaagctgcagtcacccaagcacgcctacgtcaaagatgacacaatgttc ctcaaatgcattgtggacactagtgcttag

Mus caroli (Ryukyu mouse): 110289986 Help Entry 110289986         CDS       T05910                                  Gene name Traf2 Definition (RefSeq) TNF receptor-associated factor 2 isoform X1   KO K03173   TNF receptor-associated factor 2 [EC:2.3.2.27] Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04010   MAPK signaling pathway mcal04064   NF-kappa B signaling pathway mcal04071   Sphingolipid signaling pathway mcal04141   Protein processing in endoplasmic reticulum mcal04210   Apoptosis mcal04217   Necroptosis mcal04380   Osteoclast differentiation mcal04621   NOD-like receptor signaling pathway mcal04622   RIG-I-like receptor signaling pathway mcal04657   IL-17 signaling pathway mcal04668   TNF signaling pathway mcal04920   Adipocytokine signaling pathway mcal04932   Non-alcoholic fatty liver disease mcal05010   Alzheimer disease mcal05014   Amyotrophic lateral sclerosis mcal05016   Huntington disease mcal05017   Spinocerebellar ataxia mcal05022   Pathways of neurodegeneration - multiple diseases mcal05132   Salmonella infection mcal05135   Yersinia infection mcal05160   Hepatitis C mcal05163   Human cytomegalovirus infection mcal05167   Kaposi sarcoma-associated herpesvirus infection mcal05168   Herpes simplex virus 1 infection mcal05169   Epstein-Barr virus infection mcal05170   Human immunodeficiency virus 1 infection mcal05200   Pathways in cancer mcal05203   Viral carcinogenesis mcal05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     110289986 (Traf2)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     110289986 (Traf2)    04064 NF-kappa B signaling pathway     110289986 (Traf2)    04668 TNF signaling pathway     110289986 (Traf2)    04071 Sphingolipid signaling pathway     110289986 (Traf2)  09140 Cellular Processes   09143 Cell growth and death    04210 Apoptosis     110289986 (Traf2)    04217 Necroptosis     110289986 (Traf2)  09150 Organismal Systems   09151 Immune system    04621 NOD-like receptor signaling pathway     110289986 (Traf2)    04622 RIG-I-like receptor signaling pathway     110289986 (Traf2)    04657 IL-17 signaling pathway     110289986 (Traf2)   09152 Endocrine system    04920 Adipocytokine signaling pathway     110289986 (Traf2)   09158 Development and regeneration    04380 Osteoclast differentiation     110289986 (Traf2)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     110289986 (Traf2)    05203 Viral carcinogenesis     110289986 (Traf2)   09162 Cancer: specific types    05222 Small cell lung cancer     110289986 (Traf2)   09164 Neurodegenerative disease    05010 Alzheimer disease     110289986 (Traf2)    05014 Amyotrophic lateral sclerosis     110289986 (Traf2)    05016 Huntington disease     110289986 (Traf2)    05017 Spinocerebellar ataxia     110289986 (Traf2)    05022 Pathways of neurodegeneration - multiple diseases     110289986 (Traf2)   09167 Endocrine and metabolic disease    04932 Non-alcoholic fatty liver disease     110289986 (Traf2)   09171 Infectious disease: bacterial    05132 Salmonella infection     110289986 (Traf2)    05135 Yersinia infection     110289986 (Traf2)   09172 Infectious disease: viral    05170 Human immunodeficiency virus 1 infection     110289986 (Traf2)    05160 Hepatitis C     110289986 (Traf2)    05168 Herpes simplex virus 1 infection     110289986 (Traf2)    05163 Human cytomegalovirus infection     110289986 (Traf2)    05167 Kaposi sarcoma-associated herpesvirus infection     110289986 (Traf2)    05169 Epstein-Barr virus infection     110289986 (Traf2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mcal03019]     110289986 (Traf2)    04121 Ubiquitin system [BR:mcal04121]     110289986 (Traf2) Enzymes [BR:mcal01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      110289986 (Traf2) Messenger RNA biogenesis [BR:mcal03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Stress granule specific factors      110289986 (Traf2) Ubiquitin system [BR:mcal04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     110289986 (Traf2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF_BIRC3_bd zf-TRAF zf-C3HC4 zf-C3HC4_4 MATH PIN_9 Cep57_CLD Motif Other DBs NCBI-GeneID:  110289986 NCBI-ProteinID:  XP_021012094 Ensembl:  MGP_CAROLIEiJ_G0023281 UniProt:  A0A6P7QZM6 LinkDB All DBs Position 2 AA seq 508 aa AA seqDB search MAAASVTSPGSLDLLQPGFSKTLLGTRLEAKYLCSACRNILRRPFQAQCGHRYCSFCLTS ILRCASILSSSGPQNCAACVHEGLYEEGVSILESSSAFPDNAARREVESLPAVCPNDGCT WKGTLKEYESCHEGQCPFLLTECPACKGLIRLSEKEHHTEQECPKRSLSCQHCRAPCSHV DLEVHYEVCPKFPLTCDGCGKKKIPREKFQDHVRACSKCRVLCRFHTVGCSEMVETENLQ DHEVQRLREHLALLLSSFLEAQASPGTLNQVGPELLQRCQILEQKIATFENIVCVLNREV ERVAVTAEACSRQHRLDQDKIEALSNKVQQLERSIGLKDLAMADLEQKVSELEVSTYDGV FIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRVYLNGDGTGRGTHLSLFFVV MKGPNDALLQWPFNQKVTLMLLDHNNREHVIDAFRPDVTSSSFQRPVSDMNIASGCPLFC PVSKMEAKNSYVRDDAIFIKAIVDLTGL NT seq 1527 nt NT seq  +upstreamnt  +downstreamnt atggctgcagccagtgtgacttcccctggctccctagatctgctacagcctggcttctcc aagaccctcctggggaccaggttagaagccaagtacctctgttcagcctgcagaaacatc ctgcggaggcctttccaggcccagtgtgggcaccgctactgctccttctgcctgaccagc atcctcaggtgtgcatccattctctccagctctgggcctcagaactgtgcggcctgtgtc catgaaggcctgtatgaagaaggcgtttctattctagagagtagttcggcctttccagat aacgctgcccgcagagaggtggagagcctgccagctgtctgtcccaatgatggatgcact tggaaggggaccttgaaagaatacgagagctgccacgaaggacagtgcccattcctgctg acagagtgtcctgcatgtaaaggcctgatccgcctcagcgagaaggagcaccacactgag caggaatgccccaaaaggagcctgagctgccagcactgcagagcaccctgtagccacgtg gacctggaggtacactatgaggtctgccccaagtttcccttaacctgtgatggctgtggc aagaagaagatccctcgggagaagtttcaggaccatgttagagcatgcagcaaatgccgg gttctctgcagattccacacagttggctgttcagagatggtggagactgagaacctgcag gatcatgaggtgcagcggctacgggaacacctagccctactgctgagctcattcctggag gcccaggcctccccgggaaccttgaaccaggtggggccagagctactccagcggtgccag attttggagcagaagatagccacctttgagaacatcgtctgcgtcttgaaccgtgaagta gagagggtagcagtgactgcagaggcttgtagccggcagcaccggctagaccaggacaag attgaggccctgagtaacaaggtgcaacagctggagaggagcattggcctcaaggacctg gccatggctgacctggagcagaaggtctccgagttggaagtatccacctatgatggggtc ttcatctggaagatctctgacttcaccagaaagcgtcaggaagccgtagctggccggaca ccggctatcttctccccagccttctacacaagcagatatggctacaagatgtgtctacgg gtctacttgaatggcgacggcactgggcggggaactcatctgtctctcttcttcgtggtg atgaaaggccccaatgatgctctgttgcagtggccttttaatcagaaggtaacattgatg ttgctggaccataacaaccgggagcatgtgatcgacgcattcaggcctgatgtaacctcg tcctccttccagaggcctgtcagtgacatgaacatagccagtggctgccccctcttctgc cctgtgtccaagatggaggccaagaattcctatgtgcgggatgatgctatcttcatcaaa gctattgtggacctaacaggactctag

Mus caroli (Ryukyu mouse): 110290132 Help Entry 110290132         CDS       T05910                                  Gene name Traf6 Definition (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04010   MAPK signaling pathway mcal04064   NF-kappa B signaling pathway mcal04120   Ubiquitin mediated proteolysis mcal04140   Autophagy - animal mcal04144   Endocytosis mcal04380   Osteoclast differentiation mcal04620   Toll-like receptor signaling pathway mcal04621   NOD-like receptor signaling pathway mcal04622   RIG-I-like receptor signaling pathway mcal04657   IL-17 signaling pathway mcal04722   Neurotrophin signaling pathway mcal05132   Salmonella infection mcal05133   Pertussis mcal05135   Yersinia infection mcal05140   Leishmaniasis mcal05142   Chagas disease mcal05145   Toxoplasmosis mcal05152   Tuberculosis mcal05160   Hepatitis C mcal05161   Hepatitis B mcal05162   Measles mcal05168   Herpes simplex virus 1 infection mcal05169   Epstein-Barr virus infection mcal05170   Human immunodeficiency virus 1 infection mcal05171   Coronavirus disease - COVID-19 mcal05200   Pathways in cancer mcal05222   Small cell lung cancer mcal05235   PD-L1 expression and PD-1 checkpoint pathway in cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     110290132 (Traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     110290132 (Traf6)    04064 NF-kappa B signaling pathway     110290132 (Traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     110290132 (Traf6)    04140 Autophagy - animal     110290132 (Traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     110290132 (Traf6)    04621 NOD-like receptor signaling pathway     110290132 (Traf6)    04622 RIG-I-like receptor signaling pathway     110290132 (Traf6)    04657 IL-17 signaling pathway     110290132 (Traf6)   09156 Nervous system    04722 Neurotrophin signaling pathway     110290132 (Traf6)   09158 Development and regeneration    04380 Osteoclast differentiation     110290132 (Traf6)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     110290132 (Traf6)    05235 PD-L1 expression and PD-1 checkpoint pathway in cancer     110290132 (Traf6)   09162 Cancer: specific types    05222 Small cell lung cancer     110290132 (Traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     110290132 (Traf6)    05135 Yersinia infection     110290132 (Traf6)    05133 Pertussis     110290132 (Traf6)    05152 Tuberculosis     110290132 (Traf6)   09172 Infectious disease: viral    05170 Human immunodeficiency virus 1 infection     110290132 (Traf6)    05161 Hepatitis B     110290132 (Traf6)    05160 Hepatitis C     110290132 (Traf6)    05171 Coronavirus disease - COVID-19     110290132 (Traf6)    05162 Measles     110290132 (Traf6)    05168 Herpes simplex virus 1 infection     110290132 (Traf6)    05169 Epstein-Barr virus infection     110290132 (Traf6)   09174 Infectious disease: parasitic    05145 Toxoplasmosis     110290132 (Traf6)    05140 Leishmaniasis     110290132 (Traf6)    05142 Chagas disease     110290132 (Traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:mcal04131]     110290132 (Traf6)    04121 Ubiquitin system [BR:mcal04121]     110290132 (Traf6) Enzymes [BR:mcal01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      110290132 (Traf6) Membrane trafficking [BR:mcal04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     110290132 (Traf6) Ubiquitin system [BR:mcal04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     110290132 (Traf6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_2 zf-RING_UBOX zf-C3HC4_4 zf-TRAF_2 SlyX zf-RING_5 Tropomyosin_1 DUF4455 Sina PspA_IM30 U-box DUF16 UPF0242 Spc29 Tropomyosin PKcGMP_CC ADIP TMF_DNA_bd TACC_C Motif Other DBs NCBI-GeneID:  110290132 NCBI-ProteinID:  XP_021012275 Ensembl:  MGP_CAROLIEiJ_G0024003 UniProt:  A0A6P7QU75 LinkDB All DBs Position 2 AA seq 528 aa AA seqDB search MSLLNCENSCGSSQSSSDCCAAMAASCSAAVKDDSVSANTGNLSSSFMEEIQGYDVEFDP PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF AKREILSLTVKCPNKGCLQKMELRHLEDHQVHCEFALVNCPQCQRPFQKCQVNTHIIEDC PRRQVSCVNCAVSMAYEEKEIHDQSCPLANIICEYCGTILIREQMPNHYDLDCPTAPIPC TFSVFGCHEKMQRNHLARHLQENTQLHMRLLAQAVHNVNLALRPCDAASPSRGCRPEDPN YEETIKQLESRLVRQDHQIRELTAKMETQSMYVGELKRTIRTLEDKVAEMEAQQCNGIYI WKIGNFGMHLKSQEEERPVVIHSPGFYTGRPGYKLCMRLHLQLPTAQRCANYISLFVHTM QGEYDSHLPWPFQGTIRLTILDQSEAVIRQNHEEVMDAKPELLAFQRPTIPRNPKGFGYV TFMHLEALRQGTFIKDDTLLVRCEVSTRFDMGGLRKEGFQPRSTDAGV NT seq 1587 nt NT seq  +upstreamnt  +downstreamnt atgagtctcttaaactgtgagaacagctgcgggtccagccagtcgtccagtgactgctgc gctgccatggccgcctcctgcagcgctgcagtgaaagatgacagcgtgagtgccaacacc gggaacctctccagctccttcatggaggagatccagggctacgatgtggagtttgaccca cctctggagagcaagtatgagtgccccatctgcttgatggctttacgggaagcagtgcaa acaccatgtggccacaggttctgcaaagcctgcatcatcaaatccataagggatgcaggt cacaagtgcccagttgacaatgaaatactgctggaaaatcaactgtttcctgacaatttt gcaaagcgagagattctttccctgacggtaaagtgcccaaataaaggctgtttgcaaaag atggaactgagacatctcgaggatcatcaagtacattgtgaatttgctctagtgaattgt ccccagtgccaacgtcctttccaaaagtgccaggttaatacacacattattgaggattgt cccaggaggcaggtttcttgtgtaaactgtgctgtgtccatggcatatgaagagaaagag atccatgatcaaagctgtcctctggcaaatatcatctgtgaatactgtggtacaatcctc atcagagaacagatgcctaatcattatgatctggactgcccaacagctccaatcccttgc acattcagtgtttttggctgtcatgaaaagatgcagaggaatcacttggcacgacacttg caagagaatacccagttgcacatgagactgttggcccaggctgttcataatgttaacctt gctttgcgtccgtgcgatgccgcctctccatcccggggatgtcgtccagaggacccaaat tatgaggaaactatcaaacagttggagagtcgcctagtaagacaggaccatcagatccgg gagctgactgccaaaatggaaactcagagtatgtacgtgggcgagctcaaacggaccatt cggaccctggaggacaaggttgccgaaatggaagcacagcagtgtaacgggatctacatt tggaagattggcaactttgggatgcacttgaaatcccaagaagaggaaagacctgttgtc atccatagccctggattctacacaggcagacctgggtacaagctgtgcatgcgcctgcac cttcagttaccaacagctcagcgctgtgcaaactatatatccctttttgtccacacaatg caaggagaatatgacagccacctcccctggcccttccagggtacaatacgccttacaatt cttgaccagtctgaagcagttataaggcaaaaccacgaagaggtcatggacgctaaacca gaactgcttgcctttcagcgacccacaatcccacggaaccccaaaggttttggctatgta acctttatgcacctggaagccttaagacagggaaccttcattaaggacgatacattacta gtgcgctgtgaagtctctacccgctttgacatgggtggccttcggaaggagggtttccag ccacgaagtactgatgcaggggtgtag

Mus caroli (Ryukyu mouse): 110296886 Help Entry 110296886         CDS       T05910                                  Gene name Traf5 Definition (RefSeq) TNF receptor-associated factor 5   KO K09849   TNF receptor-associated factor 5 Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04064   NF-kappa B signaling pathway mcal04217   Necroptosis mcal04621   NOD-like receptor signaling pathway mcal04657   IL-17 signaling pathway mcal04668   TNF signaling pathway mcal05163   Human cytomegalovirus infection mcal05168   Herpes simplex virus 1 infection mcal05169   Epstein-Barr virus infection mcal05170   Human immunodeficiency virus 1 infection mcal05200   Pathways in cancer mcal05203   Viral carcinogenesis mcal05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09130 Environmental Information Processing   09132 Signal transduction    04064 NF-kappa B signaling pathway     110296886 (Traf5)    04668 TNF signaling pathway     110296886 (Traf5)  09140 Cellular Processes   09143 Cell growth and death    04217 Necroptosis     110296886 (Traf5)  09150 Organismal Systems   09151 Immune system    04621 NOD-like receptor signaling pathway     110296886 (Traf5)    04657 IL-17 signaling pathway     110296886 (Traf5)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     110296886 (Traf5)    05203 Viral carcinogenesis     110296886 (Traf5)   09162 Cancer: specific types    05222 Small cell lung cancer     110296886 (Traf5)   09172 Infectious disease: viral    05170 Human immunodeficiency virus 1 infection     110296886 (Traf5)    05168 Herpes simplex virus 1 infection     110296886 (Traf5)    05163 Human cytomegalovirus infection     110296886 (Traf5)    05169 Epstein-Barr virus infection     110296886 (Traf5)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:mcal04121]     110296886 (Traf5) Ubiquitin system [BR:mcal04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     110296886 (Traf5) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-TRAF_2 zf-C3HC4_4 Sina zf-RING_UBOX Med4 zf-RING_6 zf-RING_2 zf-RING_5 TFA2_Winged_2 Exonuc_VII_L ATG16 Mod_r DUF4279 Motif Other DBs NCBI-GeneID:  110296886 NCBI-ProteinID:  XP_021021347 Ensembl:  MGP_CAROLIEiJ_G0015058 UniProt:  A0A6P5Q426 LinkDB All DBs Position 1 AA seq 558 aa AA seqDB search MAHSEEQAAVPCAFIRQNSGNSVSLDFEPDTEYQFVEQLEERYKCAFCHSVLHNPHQTGC GHRFCQQCIRSLRELNSVPICPVDKEVIKPQEVFKDNCCKREVLNLHVYCKNAPGCNARI ILGRFQDHLQHCSFQAVPCPNESCREAMLRKDVKEHLSAYCRFREEKCLYCKRDIVVTNL QDHEENSCPAYPVSCPNRCVQTIPRARVNEHLTVCPEAEQDCPFKHYGCTVKGKRGNLQE HERAALQDHMLLVLEKNYQLEQQISDLYQSLEQKESKIQQLAGTVKKFEKELKQFTQMFG RNGTFLSNVQALTSHTDKSAWLEAQVRQLLQIVNQQPSRLDLRSLVDAVDSVKQRITQLE ASDQRLVLLEGETSKHDAHINIHKAQLNKNEERFKQLEGACYSGKLIWKVTDYRVKKREA VEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ RVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIK DDTLFLKVAVDLTDLEDL NT seq 1677 nt NT seq  +upstreamnt  +downstreamnt atggctcattcggaggagcaagcggctgtcccctgtgccttcatccgccagaactctggc aactccgtttccttggactttgagcccgacacggagtaccagtttgtggagcagctggaa gaacgctacaaatgtgccttctgccactcagtgcttcacaacccccatcagaccggctgc gggcaccgcttctgccagcagtgcatccggtctctgagagaattgaactcggtgccgatc tgcccggtggacaaggaggtcatcaagcctcaggaggtgttcaaagacaactgctgcaaa agagaagttctcaatttacacgtctactgcaaaaacgcccccgggtgcaatgccaggatt attctgggacgattccaggaccaccttcagcactgttccttccaagctgtgccctgccct aatgagagctgccgggaagccatgctccggaaagacgtgaaagagcacctgagcgcatac tgccggttccgagaggagaagtgcctttactgcaaaagggacatagtggtgaccaacctg caggatcatgaggaaaactcgtgtcctgcgtacccagtgtcttgtcccaacaggtgtgtg cagactattccaagagctagggtgaatgaacaccttactgtatgtcctgaggctgagcaa gactgtccctttaagcactatggctgcactgtcaagggaaagcgggggaacttgcaggag catgagcgggcagccctgcaggaccacatgcttctggttttagagaagaactaccaacta gaacagcagatctctgatttatatcagagtctcgaacagaaggaaagcaagatccagcag ctggcaggaaccgtgaagaagttcgaaaaggagcttaagcagttcacacagatgtttggc agaaatggaactttcctctcaaatgtccaggctctcaccagtcacacggacaagtcagct tggctggaagcgcaggtacggcagctgctacaaatagttaaccagcagccaagtcgactt gatctgaggtctttggtggatgcggttgacagcgtgaaacagaggatcacccagctggaa gccagtgaccagagattagttcttttagagggggagaccagcaagcacgatgcacacatt aatatccacaaagcacagctgaataagaacgaagagcggtttaagcagctggagggcgcc tgctacagtggcaaactcatctggaaggtgacagattacagggtgaagaagagggaggct gtggaggggcacacagtgtccgtcttcagccagcctttctacaccagccgctgcggctac cggctctgtgccagggcatacctgaacggggacgggtcagggaagggaacgcacctgtcc ctgtactttgtggtgatgcgcggtgagtttgactcgctgctgcagtggccgttcaggcag agggtgaccctgatgcttttggaccagagtggcaagaagaaccatattgtggagaccttc aaagctgaccccaacagcagcagcttcaaaaggccagatggcgagatgaacattgcctct ggctgtccccgctttgtgtcacactctactctggagaactccaagaacacctacattaaa gacgacaccctgttcttgaaagtggccgtggatttaactgacttagaggatctgtag

Mus caroli (Ryukyu mouse): 110305822 Help Entry 110305822         CDS       T05910                                  Gene name Traf4 Definition (RefSeq) TNF receptor-associated factor 4   KO K09848   TNF receptor-associated factor 4 Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04657   IL-17 signaling pathway mcal05200   Pathways in cancer mcal05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09150 Organismal Systems   09151 Immune system    04657 IL-17 signaling pathway     110305822 (Traf4)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     110305822 (Traf4)   09162 Cancer: specific types    05222 Small cell lung cancer     110305822 (Traf4) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-Nse zf-C3HC4_4 zf-RING_5 zf-TRAF_2 zf-RING_2 zf-RING_6 zf-C3HC4_3 zf-rbx1 Sina Motif Other DBs NCBI-GeneID:  110305822 NCBI-ProteinID:  XP_021033610 Ensembl:  MGP_CAROLIEiJ_G0016790 UniProt:  A0A6P5QWQ3 LinkDB All DBs Position 11 AA seq 470 aa AA seqDB search MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLP LDYAKIYPDPELEVQVLGLAIRCIHSEEGCRWNGPLRHLQGHLNTCSFNVVPCPNRCPAK LSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGVCPQESVYCENKCGARMMRRLL AQHATSECPKRTQPCAYCTKEFVYDTIQSHQYQCPRLPVPCPNQCGVGTVAREDLPTHLK DSCSTAFVLCPFKESGCKHRCPKLAMGRHVEESVKPHLAMMCALVSRQRQELQELRRELE ELSIGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEG THLSIYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKP GTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRASVELPRKILS NT seq 1413 nt NT seq  +upstreamnt  +downstreamnt atgcccggcttcgactacaagttcctggagaagcccaagcggcggctgctgtgcccactg tgcgggaagcccatgcgcgagcctgtgcaggtgtctacttgtggccaccgcttctgcgac acctgcctgcaggagtttctcagtgaaggagtcttcaaatgccctgaggaccaacttcct ctggactatgccaagatctacccagacccagagctggaggtccaggtgttaggcttggct atccgctgcatccacagtgaggagggctgccgctggaacgggccacttcgtcatctacag ggccacttgaacacttgcagcttcaatgtagtcccctgcccgaatcgctgcccagccaag ctgagccggcgtgatctgcctgctcacctgcagcacgactgccctaagcgccgcctcaaa tgtgaattctgtggctgtgacttcagtggggaggcctacgagagtcacgagggcgtgtgc ccccaagagagtgtgtactgtgagaacaagtgtggggcccgcatgatgaggcgactgttg gcccagcatgccacgtctgagtgccccaagcgcacccagccctgtgcctactgtaccaag gaatttgtttatgacaccatccagagccaccagtaccagtgcccacgcctgcctgttccc tgccccaaccaatgtggagtgggcactgtggcccgggaagacctgcccacccatctgaag gatagctgcagcactgcctttgttctctgccctttcaaagagtctggctgtaagcacagg tgccctaagctggcaatgggacgtcacgtggaggagagcgtaaagccacatctggctatg atgtgtgccctggtgagccggcagcggcaagagctgcaggagctgcgaagagaactggaa gagttatccataggcagcgatggagtgctcatctggaagattggcagttatgggcgtcgt ctacaagaggccaaggccaagcctaacctggagtgcttcagcccagccttctatactcat aagtacggctacaagctgcaggtatctgcattcctcaacggcaacggcagtggtgagggc acacacctctccatctacatccgcgtcttgccgggcgcctttgacaatctccttgagtgg ccctttgcccgccgggtcaccttctccttactggatcagagtgacccaggtttggctaag ccccagcatgtcactgagaccttccaccctgatccaaactggaagaacttccagaagcct ggcacgtggcgaggctccctggatgagagttctctgggcttcggctaccccaagttcatt tcccaccaggacatccgaaagcggaattacgtgcgggatgatgcggttttcatccgtgcc tctgtcgaactgccccggaagatcctcagctga

Mus caroli (Ryukyu mouse): 110306954 Help Entry 110306954         CDS       T05910                                  Gene name Traf3 Definition (RefSeq) TNF receptor-associated factor 3   KO K03174   TNF receptor-associated factor 3 Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04064   NF-kappa B signaling pathway mcal04620   Toll-like receptor signaling pathway mcal04621   NOD-like receptor signaling pathway mcal04622   RIG-I-like receptor signaling pathway mcal04657   IL-17 signaling pathway mcal04668   TNF signaling pathway mcal05160   Hepatitis C mcal05161   Hepatitis B mcal05162   Measles mcal05164   Influenza A mcal05165   Human papillomavirus infection mcal05167   Kaposi sarcoma-associated herpesvirus infection mcal05168   Herpes simplex virus 1 infection mcal05169   Epstein-Barr virus infection mcal05171   Coronavirus disease - COVID-19 mcal05200   Pathways in cancer mcal05203   Viral carcinogenesis mcal05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09130 Environmental Information Processing   09132 Signal transduction    04064 NF-kappa B signaling pathway     110306954 (Traf3)    04668 TNF signaling pathway     110306954 (Traf3)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     110306954 (Traf3)    04621 NOD-like receptor signaling pathway     110306954 (Traf3)    04622 RIG-I-like receptor signaling pathway     110306954 (Traf3)    04657 IL-17 signaling pathway     110306954 (Traf3)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     110306954 (Traf3)    05203 Viral carcinogenesis     110306954 (Traf3)   09162 Cancer: specific types    05222 Small cell lung cancer     110306954 (Traf3)   09172 Infectious disease: viral    05161 Hepatitis B     110306954 (Traf3)    05160 Hepatitis C     110306954 (Traf3)    05171 Coronavirus disease - COVID-19     110306954 (Traf3)    05164 Influenza A     110306954 (Traf3)    05162 Measles     110306954 (Traf3)    05168 Herpes simplex virus 1 infection     110306954 (Traf3)    05167 Kaposi sarcoma-associated herpesvirus infection     110306954 (Traf3)    05169 Epstein-Barr virus infection     110306954 (Traf3)    05165 Human papillomavirus infection     110306954 (Traf3) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  zf-TRAF zf-C3HC4 ATG16 Crescentin MPS2 zf-C3HC4_2 Spc7 Spc29 Cast zf-RING_4 Tropomyosin_1 KxDL T3SSipB FliJ BLOC1_2 DUF1664 Exonuc_VII_L GAS DUF3450 SPATA24 Motif Other DBs NCBI-GeneID:  110306954 NCBI-ProteinID:  XP_021034790 Ensembl:  MGP_CAROLIEiJ_G0018127 UniProt:  A0A6P7RYT9 LinkDB All DBs Position 12 AA seq 567 aa AA seqDB search MESSKKMDAAGTLQPNPPLKLQPDRGAGSVLVPEQGGYKEKFVKAVEDKYKCEKCRLVLC SPKQTECGHRFCESCMAALLSSSSPKCTACQESIIKDKVFKDNCCKREILALQIYCRNEG RGCAEQLTLGHLLVHLKNECQFEELPCLRADCKEKVLRKDLRDHVEKACKYREATCSHCK SQVPMIKLQKHEDTDCPCVVVSCPHKCSVQTLLRSELSAHLSECVNAPSTCSFKRYGCVF QGTNQQIKAHEASSAVQHVNLLKEWSNSLEKKVSLLQNESVEKNKSIQSLHNQICSFEIE IERQKEMLRNNESKILHLQRVIDSQAEKLKELDKEIRPFRQNWEEADSMKSSVESLQNRV TELESVDKSAGQAARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWK IRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGE YDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQT VLENGTYIKDDTIFIKVIVDTSDLPDP NT seq 1704 nt NT seq  +upstreamnt  +downstreamnt atggagtcaagcaaaaagatggatgctgctggcacactgcagcctaacccacccctaaag ctgcagcctgatcgcggcgcagggtccgtgctcgtgccggagcaaggaggctacaaggag aagtttgtgaaggcggtggaagacaagtacaaatgcgagaagtgccgcctggtgctgtgc agcccgaagcagacggagtgtggccaccggttctgcgagagctgcatggccgccctgctg agctcctccagtccaaaatgcacagcgtgccaagaaagcatcatcaaagacaaggtgttt aaggataattgctgcaagagggagattctggcccttcagatctactgtcggaatgaaggc agaggttgtgcggagcagctgactctgggacatctgctggtgcacctaaaaaatgaatgt cagtttgaggaacttccctgtctgcgtgctgactgcaaagaaaaagtactgagaaaagac ttacgggatcacgtggaaaaggcctgtaaataccgcgaggccacgtgcagtcactgcaag agccaagtgcccatgatcaaactgcagaaacacgaagacacggattgtccctgcgtggtg gtgtcctgccctcacaagtgcagcgttcagactcttctaaggagtgagttgagtgcacac ttgtccgagtgtgtcaatgcccccagcacctgtagttttaagcgctatggctgcgttttt cagggtacaaaccagcagatcaaggcccatgaggccagctccgcggtacagcacgtgaac ctgctgaaggagtggagcaactccctggagaagaaggtttccctactgcagaatgaaagt gttgagaaaaacaagagcatacaaagcctgcacaaccagatctgcagctttgagatcgag attgagaggcagaaggagatgctccgaaacaacgagtccaagatccttcacctgcagcgg gtaatcgacagccaagcagagaaactgaaagaactggacaaggagatccgtcccttccgg cagaactgggaggaagcggacagcatgaagagcagtgtggagtccctccagaaccgagtg actgagctggagagcgtagacaaaagtgcggggcaggccgctcgcaacacaggcttgctg gagtcccagctgagccggcatgaccagatgttgagtgttcatgacatccgcttggccgac atggacctgcggttccaggtcctcgaaaccgccagctacaatggggtgctgatctggaag atccgtgactacaagcgccggaagcaggaggctgtcatggggaagaccctgtctctctac agccagcctttctacacaggttattttggctataagatgtgtgccagggtctacctgaat ggggacggaatggggaaagggacacacttgtcgctgttttttgtcattatgcgtggagaa tatgatgctctgttgccatggccgttcaagcagaaagtgacacttatgctgatggatcag gggtcctctcgccgtcatctgggagatgcgttcaagcccgaccccaacagcagtagcttc aagaaacccaccggagagatgaatatcgcctctggctgcccagtctttgtcgcccaaact gttctagagaacgggacgtatattaaagatgatacaatttttattaaagtcatagtggat acctcggatctgcctgacccctga

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