Mus caroli (Ryukyu mouse): 110299740
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Entry
110299740 CDS
T05910
Symbol
Ddx39a
Name
(RefSeq) ATP-dependent RNA helicase DDX39A isoform X1
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110299740 (Ddx39a)
Enzymes [BR:
mcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110299740 (Ddx39a)
Spliceosome [BR:
mcal03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110299740 (Ddx39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
110299740
NCBI-ProteinID:
XP_021025197
Ensembl:
MGP_CAROLIEiJ_G0031277
UniProt:
A0A6P7RHM1
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All DBs
Position
8:75039424..75047639
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AA seq
427 aa
AA seq
DB search
MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVR
SRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaggatgtggaaaatgagcttttggattatgatgaagatgaagagccccag
gcaccccaggagagcactccagctcccccgaagaaagatgtcaaaggatcttatgtctcc
atccacagttctggcttccgggactttctgctgaaaccagagctcctgagagctatagtt
gactgtggctttgagcatccttcagaggtccagcatgagtgtattccccaggccattctg
ggtatggatgtcctgtgccaggccaagtctgggatgggcaagacagctgtgtttgtgctg
gccaccctgcagcagatcgaacctgtcaatggccaggtatcagtcctggtcatgtgccac
acgagggagctggccttccagatcagcaaggagtatgagcgcttctctaagtacatgccc
agtgttaaggtttctgtgttctttggaggcctctccattaagaaggatgaagatgtgttg
aagaagaactgtcctcatgttgtggtggggacaccaggccggatcctggcacttgtgcgg
agcagaagcctcaacctgaggaatgtgaagcactttgtgctagatgaatgtgacaagatg
ctcgaacagctggacatgcgccgggatgtacaggagatctttcgtctgacaccccacgag
aagcagtgtatgatgttcagcgccaccctgagcaaggagatccggccagtctgcaggaag
ttcatgcaggatcctatggaggtgtttgtggacgacgagaccaagctcacactgcacggg
ctgcagcagtattacgtcaagctcaaggacagcgagaagaaccgtaagctcttcgacctc
ctcgacgtgctagagtttaaccaggtggtgatctttgtcaagtctgtgcaacgctgcatg
gccctggcccagctcctagtggagcagaatttcccagctatcgctattcaccgaggcatg
gcccaggaggagcgcctgtcccgataccagcagttcaaggacttccagcgacgaatcctg
gtggctactaatctgtttggcagaggtatggacattgaacgagtcaacattgtcttcaac
tatgacatgccagaggactcagacacctaccttcaccgagtggctcgtgctggtcgcttt
ggtaccaagggcctggcagtcacttttgtatcggatgagaatgatgccaaaatccttaat
gatgttcaggaccggtttgaagtgaatgtagctgagcttccagaggaaatagatatctcc
acatacattgagcagagccggtaa
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