Mus caroli (Ryukyu mouse): 110305663
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Entry
110305663 CDS
T05910
Symbol
Npc1l1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04975
Fat digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
110305663 (Npc1l1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mcal02000
]
110305663 (Npc1l1)
Transporters [BR:
mcal02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
110305663 (Npc1l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
ACR_tran
DUF6196
Motif
Other DBs
NCBI-GeneID:
110305663
NCBI-ProteinID:
XP_021033383
Ensembl:
MGP_CAROLIEiJ_G0016068
UniProt:
A0A6P5QQM4
LinkDB
All DBs
Position
11:complement(3066399..3085879)
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AA seq
1333 aa
AA seq
DB search
MAAAWQGWLLWALLLNSAQGEPYTPIHKAGVCTFYEECGKNPELSGGLTSLSNISCLSNT
PARHVTGDHLTLLQRVCPRLYKGPNTTYACCSTKQLVSLDSSLSITKALLTRCPACSDNF
VSIHCHNTCSPDQSLFINVTRVVKRDTEQLPAVVAYEAFYQRSFAEKAYESCSRVRIPAA
ASLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLLEPDQALADGMQPLNGKI
TPCNESQGEDSAACSCQDCAASCPVIPPPPALRPSFYMGSMSGWLALIIIFASVFALLSA
VLVYLRVVSNRNKNKTAGSQEAPNLPRKRRFSPHTVLGRFFESWGTRVASWPLTVLALSF
IVVIALSVGLTFIELTTDPVELWSAPKSQARKEKAFHDEHFGPFFRTNQIFVTAKNRSSY
KYDSLLLGPKNFSGILSLDLLQELLELQERLRHLQVWSHEAQRNISLQDICYAPLKPHNT
SLTDCCVNSLLQYFQNNRTLLLLTANQTLNGQTSLVDWKDHFLYCANAPLTYKDGTALAL
SCIADYGAPVFPFLAVGGYQGTDYSEAEALVITFSVNNYPAEDPRMAYAKLWEEAFLKEM
QSFQRSTADKFQIAFSAERSLEDEINRTTIQDLPVFAISYLIVFLYISLALGSYSRWSRV
AVESKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLE
YQRLPRMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGALTSMPAVRTFALTSGLAI
IFDFLLQMTAFVALLSLDSKRQEASRPDVVCCFSSRNLPPPKQKEGLLLCFFRKIYTPFL
LHRFIRPVVLLLFLVLFGANLYLMCNISVGLDQELALPKDSYLIDYFLFLNRYLEVGPPV
YFDTTSGYNFSLEAGMNAICSSAGCESFSLTQKIQYASEFPNQSYVAIAASSWVDDFIDW
LTPSSSCCRIYTRGPHKDEFCPSTDTSFNCLKNCMNRTLGPVRPTAEQFHKYLPWFLNDT
PNIRCPKGGLAAYRTSVNLSSDGQIIASQFMAYHKPLRNSQDFTEALRASRLLAANITAE
LRKVPGTDPNFEVFPYTISNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDIRSGI
LNLLSIIMILVDTIGLMAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLE
RAKDATIFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLP
VVLSYLGPDVNQALVLEEKLATEAAMASEPSCPQNPFPADANTNDYVNYGFNPEFIPEVN
AASSSLPKSDQKF
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcctggcagggatggctgctctgggccctgctcctgaattcggcccagggt
gagccctacacacccattcacaaagctggcgtctgcaccttttatgaagagtgtgggaag
aacccagagctctctggaggcctcacatcactatccaacatctcgtgcttgtctaatacc
ccagcccgccatgtcacaggtgaccacctgactcttctccagcgcgtctgtccccgccta
tacaaaggccccaataccacctatgcctgttgctctaccaagcagctggtgtcattagac
agtagcctatctatcaccaaggccctccttacacgctgcccggcatgctctgacaatttt
gtgagcatacactgtcataatacttgcagccctgaccagagcctcttcatcaatgtcact
cgcgtggttaagcgggacactgaacagcttcctgccgtggtggcctatgaggccttttat
caacgcagttttgcagagaaggcctatgagtcctgtagccgggtgcgcatccctgcagct
gcctcgctggctgtgggcagcatgtgtggagtgtatggctctgccctctgcaatgctcag
cgctggctcaacttccaaggagacacagggaatggcctggctccgctggacatcaccttc
cacctcttggagcctgaccaggccctggcagatgggatgcagccactgaatgggaagatc
acaccctgcaatgagtcccagggcgaagactcggcagcctgttcctgccaggactgtgca
gcatcctgccctgtcatccctccgcccccggccttgcgcccttctttctatatgggtagc
atgtcaggctggctggctctcatcatcatctttgcttctgtctttgcattgctctctgct
gtccttgtatatctccgagtggtttccaacaggaacaagaacaagacagcaggctcccag
gaagcccccaacctccctcgtaagcgcaggttctcgcctcacactgtccttggccggttc
ttcgagagctggggcacaagggtggcctcatggccactgactgtcttggcactgtccttc
atagttgtgatagccttgtcagtaggcctgacctttatagaactcaccacagaccctgtg
gaactgtggtcggcccccaaaagccaagcccggaaagaaaaggctttccatgatgagcat
tttggccccttcttccgaaccaaccagatttttgtgacagctaagaacaggtccagctac
aagtatgactccctgctgctagggcccaagaacttcagtgggatcctgtccctggacttg
ctgcaggagctgttggagctacaggagagacttcgacacctgcaagtgtggtcccatgag
gcacagcgcaacatctccctacaggacatctgttatgctcccctcaagccgcataacacc
agcctcactgactgctgtgtcaacagccttcttcagtacttccagaacaaccgcacactc
ctgctgctcacagccaaccagactctgaatggccagacctccctggtggactggaaggac
catttcctctactgtgccaatgcccctctcacgtacaaagatggcacagccctggccctg
agctgcatagctgactacggggcgcctgtcttccccttccttgctgttggggggtaccaa
gggacggactactcagaggcagaagccctggtcataaccttctctgtcaataactacccc
gctgaggatccccgcatggcctacgccaagctctgggaggaggctttcttgaaggaaatg
caatccttccagagaagcacagctgacaagttccagattgcgttctcagctgagcgttct
ctggaagacgagatcaatcgcactaccatccaggacctgcctgtctttgccatcagctac
cttatcgtctttctgtacatctccctggccctgggcagctactccagatggagccgagtt
gcggtggagtccaaggctactctgggcctaggtggggtggctgttgtgctgggagcagtc
gtggctgccatgggcttctactcctacctgggtgtcccctcctctctggtcatcattcaa
gtggtacctttcctggtgctggctgtgggagctgacaacatcttcatctttgttcttgag
taccagaggctgcctaggatgcccggggagcagcgagaggctcacattggccgcaccctg
ggtagtgtggcccccagcatgctgctgtgcagcctctctgaggccatctgcttctttcta
ggggccctgacctccatgccagctgtgaggacctttgccttgacctctggcttagcgatc
atcttcgacttcctgctccagatgaccgcctttgtggccctgctctccctggatagcaag
aggcaggaggcctctcgccccgacgtcgtgtgctgcttttcaagccgaaatctgccccca
ccgaaacaaaaagaaggcctcttactctgcttcttccgcaagatatacactcccttcctg
ctgcacagattcatccgccctgttgtgctgctgctctttctggtcctgtttggagcaaac
ctctacttaatgtgcaacatcagcgtggggctggaccaggagctggctctgcccaaggat
tcctacctgatagactacttcctctttctgaaccggtacttggaagtggggcctccagtg
tactttgacaccacctcaggctacaacttctccctcgaggcaggcatgaacgccatttgc
tctagtgcgggttgtgagagcttctccctaacccagaaaatccagtatgccagtgaattc
cctaaccagtcttatgtggctattgctgcatcctcctgggtagatgacttcatcgactgg
ctgaccccatcctcctcctgctgccgcatttatacccgtggcccccataaagatgagttc
tgtccctcaacggatacttccttcaactgtctcaaaaactgcatgaaccgcactctgggt
cctgtgagacccacagcagaacagtttcataagtacctgccctggttcctgaatgataca
cccaacatcagatgtcctaaagggggtctagcagcgtatagaacctctgtgaatttgagc
tcagatggccagattatagcctcccagttcatggcctaccacaagcccttaaggaactca
caggactttacagaagctctccgggcatcccggttgctagcagccaacatcacagctgaa
ctacggaaggtgcctgggacagatcccaactttgaggtcttcccttacacgatctccaac
gtgttctaccagcaatacctgacggttctccctgagggaatcttcactcttgctctctgc
ttcgtgcccacctttgttgtctgctacctcctactgggcctggacatacgctcaggcatc
ctcaacctgctctccatcattatgatcctcgtggacaccatcggcctcatggctgtgtgg
ggtatcagctacaatgctgtgtccctcatcaaccttgtcacggcagtgggcatgtctgtg
gagttcgtgtcccacattaccaggtcctttgctgtaagcaccaagcccacccggctggag
agagccaaagatgctactatcttcatgggcagtgcggtgtttgctggagtggccatgact
aacttcccaggcatcctcatcctgggctttgctcaggcccagcttatccagattttcttc
ttccgcctcaacctcctgatcaccttgctaggtctgctacacggcctggtcttcctgccc
gttgtcctcagctatctggggccagatgttaaccaagctctggtactggaggagaaacta
gccactgaggcagccatggcctcagagccttcttgcccacagaaccccttcccggctgat
gcaaacaccaatgactatgttaactacggttttaatccagaatttatccctgaagttaat
gctgctagcagctctctgcccaaaagtgaccaaaagttctaa
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