Mus caroli (Ryukyu mouse): 110310932 Help Entry 110310932         CDS       T05910                                  Gene name Thbs1 Definition (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism mcal  Mus caroli (Ryukyu mouse) Pathway mcal04015   Rap1 signaling pathway mcal04115   p53 signaling pathway mcal04145   Phagosome mcal04151   PI3K-Akt signaling pathway mcal04350   TGF-beta signaling pathway mcal04510   Focal adhesion mcal04512   ECM-receptor interaction mcal05144   Malaria mcal05165   Human papillomavirus infection mcal05205   Proteoglycans in cancer mcal05206   MicroRNAs in cancer mcal05219   Bladder cancer Brite KEGG Orthology (KO) [BR:mcal00001]  09130 Environmental Information Processing   09132 Signal transduction    04015 Rap1 signaling pathway     110310932 (Thbs1)    04350 TGF-beta signaling pathway     110310932 (Thbs1)    04151 PI3K-Akt signaling pathway     110310932 (Thbs1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110310932 (Thbs1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     110310932 (Thbs1)   09143 Cell growth and death    04115 p53 signaling pathway     110310932 (Thbs1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     110310932 (Thbs1)  09160 Human Diseases   09161 Cancer: overview    05206 MicroRNAs in cancer     110310932 (Thbs1)    05205 Proteoglycans in cancer     110310932 (Thbs1)   09162 Cancer: specific types    05219 Bladder cancer     110310932 (Thbs1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     110310932 (Thbs1)   09174 Infectious disease: parasitic    05144 Malaria     110310932 (Thbs1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:mcal04131]     110310932 (Thbs1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:mcal00536]     110310932 (Thbs1)    04990 Domain-containing proteins not elsewhere classified [BR:mcal04990]     110310932 (Thbs1) Membrane trafficking [BR:mcal04131]  Endocytosis   Phagocytosis    Opsonins     110310932 (Thbs1) Glycosaminoglycan binding proteins [BR:mcal00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110310932 (Thbs1) Domain-containing proteins not elsewhere classified [BR:mcal04990]  Thrombospondin domain-containing proteins   Thrombospondins    110310932 (Thbs1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC cEGF EGF_3 TSP1_ADAMTS EGF_CA Laminin_G_3 Laminin_G_2 TSP1_CCN EGF Laminin_G_1 Motif Other DBs NCBI-GeneID:  110310932 NCBI-ProteinID:  XP_021039776 Ensembl:  MGP_CAROLIEiJ_G0024112 UniProt:  A0A6P5RAS8 LinkDB All DBs Position 2 AA seq 1170 aa AA seqDB search MELLRGLGVLFLLHMCGSNRIPESGGDNGVFDIFELIGGARRGPGRRLVKGQDLSSPAFR IENANLIPAVPDDKFQDLLDAVWADKGFIFLASLRQMKKTRGTLLAVERKDNSGQIFSVV SNGKAGTLDLSLSLPGKQQVVSVEEALLATGQWKSITLFVQEDRAQLYIDCDKMESAELD VPIQSIFTRDLASVARLRVAKGDVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTNVLL TLDNNVVNGSSPAIRTNYIGHKTKDLQAICGLSCDELSSMVLELKGLRTIVTTLQDSIRK VTEENRELVSELRRPPLCFHNGVQYKNNEEWTVDSCTECHCQNSVTICKKVSCPIMPCSN ATVPDGECCPRCWPSDSADDGWSPWSEWTSCSATCGNGIQQRGRSCDSLNNRCEGSSVQT RTCHIQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARE TKACKKDACPINGGWGPWSPWDICSVTCGGGVQRRSRLCNNPTPQFGGKDCVGDVTENQV CNKQDCPIDGCLSNPCFAGAKCTSYPDGSWKCGACPPGYSGNGIQCKDVDECKEVPDACF NHNGEHRCKNTDPGYNCLPCPPRFTGSQPFGRGVEHAMANKQVCKPRNPCTDGTHDCNKN AKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCPN LPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYN HNPDQADTDNNGEGDACAVDIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEH NPDQLDSDSDLIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDN DGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDHDNVPDIDDICPENFDISETDFRRF QMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDD DYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNAL WHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYD KTYAGGRLGLFVFSQEMVFFSDMKYECRDS NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atggagctcctgcggggattaggtgtcctgttcctgttgcatatgtgtggaagcaaccgc attccagagtctgggggagacaacggtgtgtttgacatctttgagctcattggaggtgca cgaaggggccccggtcgccgactggtgaagggccaagatctatccagccctgccttccga attgagaatgccaacctgatccccgctgtgccggatgacaagttccaagacctactggat gctgtgtgggcagacaaaggcttcatcttcctggcttccttgaggcagatgaagaagact cggggcacactcctggctgtggaacggaaagacaacagtggccagatcttcagtgtggtc tccaacggcaaagctggcaccctggacctgagcctgagcctgccggggaagcaacaagtg gtgtcagtggaggaagctctcctggccactggccagtggaagagcatcacgctgtttgtt caagaggaccgggctcaactctacattgactgtgataagatggagagcgcggagctggat gtacccatccagagcatcttcaccagggatctggccagcgttgctaggctccgagttgca aagggagatgtcaatgacaattttcagggggtgctgcagaatgtgaggtttgtctttgga accaccccagaagacattctcaggaacaaaggctgctccagctctaccaacgtccttctc acccttgacaacaacgtggtgaacggttccagccctgcgatccgcaccaactacatcggc cacaaaacaaaggacctccaagctatctgtggcctctcctgtgacgaactatccagcatg gtcctggaactgaagggcctgcgcaccatcgtgaccacgctgcaggacagcatccgcaaa gtgacggaagaaaacagagagctggtcagtgagctgaggcggcctcccctctgctttcac aatggagtccagtacaagaacaacgaggagtggactgtagacagttgcacagagtgtcac tgccagaactcggttaccatctgcaaaaaggtgtcctgtcccatcatgccctgctccaac gccacagttcctgatggtgaatgctgcccacggtgctggcccagcgactctgctgacgat ggctggtctccctggtctgagtggacctcctgctctgccacatgtggcaatgggattcag caacgtggtcgctcctgtgacagcctcaacaacagatgcgagggctcttcggtacagacg aggacctgccacattcaggagtgcgacaaaagatttaaacaggatggtggctggagtcac tggtctccgtggtcgtcctgttctgtgacctgtggtgacggtgtgatcacaaggatccgg ctctgcaactcccccagcccccagatgaacgggaagccctgtgaaggtgaagcccgggag accaaagcctgcaagaaagatgcctgcccaattaatggaggctggggtccctggtcacca tgggacatctgctctgtcacctgtggaggaggagtgcagagacgcagccgactctgtaac aaccccacaccccagtttggaggcaaagactgtgttggcgatgtgacagaaaatcaagtt tgcaacaagcaggactgtccgattgatggatgcctgtccaatccctgctttgctggtgcc aagtgtactagctaccctgatggtagctggaaatgtggtgcgtgtcctcctggctacagt ggaaatggcatccagtgcaaagacgtcgatgagtgcaaagaagtgcctgatgcttgcttc aatcacaacggagaacatcggtgcaagaacacagatcctggctacaactgcctgccctgc ccaccacgattcaccggctcacagcccttcggccgaggtgtcgaacatgccatggccaac aaacaggtgtgcaaacctcgaaacccctgcacggacgggacgcatgactgcaacaagaac gccaagtgcaactacctgggtcactacagcgaccccatgtaccgctgtgagtgcaagccc ggctacgcaggcaatggcatcatctgcggagaggacacagacctggacggctggcctaat gaaaacctggtgtgtgtggccaacgcaacctaccactgcaaaaaggacaactgtcccaac cttcccaactcagggcaggaagactatgacaaggacgggattggcgatgcctgcgatgat gacgatgacaacgacaagatccccgatgacagggacaactgtccattccattacaaccca gcccagtatgactatgacagagatgatgtgggagaccgctgtgacaactgcccctacaac cacaaccctgaccaagcagacacagacaacaacggggagggcgatgcctgtgcggtggac atcgatggagatggaatcctcaatgaacgagacaactgccagtacgtttacaacgtggac cagagggacacggacatggatggggttggagatcagtgtgacaactgccccctggaacac aatccagaccagctggactctgactcagacctcataggggacacttgtgacaacaatcag gacatcgatgaggatggccatcagaacaatctggacaactgtccctatgtgcctaatgcc aaccaggccgaccatgataaagatggcaaaggagatgcctgtgaccatgacgatgacaat gacggcatccctgatgacagagacaactgcaggctggtgcccaatcctgaccagaaggac tctgatggtgatggccgaggtgatgcctgcaaagacgactttgaccatgacaatgtgcca gacattgatgacatctgtcctgagaattttgacatcagtgaaaccgatttccgacgattc cagatgattcctctagatcccaaaggaacctcccaaaatgatcctaactgggttgtccgc catcagggcaaagaactcgtccagactgtaaactgtgaccctggacttgctgtaggttat gatgagtttaatgccgtggacttcagcggtaccttcttcatcaacaccgagagagatgat gactatgctggctttgttttcggctaccagtccagcagccgcttctacgttgtgatgtgg aaacaagtcacccagtcctactgggacaccaaccccacaagagctcagggatactcaggc ctgtctgtaaaggttgtgaactccaccaccggccctggcgagcacctgcggaatgcactg tggcacacaggaaacacccctggccaggtgcgcaccctgtggcatgaccctcgccacatc ggctggaaagatttcactgcgtacagatggcggctcagccacaggccaaagaccggtttt atcagagtggtgatgtatgaaggaaagaaaatcatggctgactcgggacccatctatgac aaaacctacgccggcggtagactaggcctgttcgtcttctctcaagaaatggtgttcttc tcggacatgaaatacgagtgtcgagattcctaa

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