Mus caroli (Ryukyu mouse): 110311956
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Entry
110311956 CDS
T05910
Symbol
Scaf4
Name
(RefSeq) splicing factor, arginine/serine-rich 15 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
mcal
Mus caroli (Ryukyu mouse)
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110311956 (Scaf4)
03041 Spliceosome [BR:
mcal03041
]
110311956 (Scaf4)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110311956 (Scaf4)
Spliceosome [BR:
mcal03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
110311956 (Scaf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110311956
NCBI-ProteinID:
XP_021041190
Ensembl:
MGP_CAROLIEiJ_G0020944
UniProt:
A0A6P5RB41
LinkDB
All DBs
Position
16:complement(84622818..84677480)
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AA seq
1215 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVKVSSELAQAPTNSMPTVAQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPQPQSPALDSAVMAQVQAITAQLKTAPTQP
PEQKTAFDKKLLDRFDYDDEPEAVEDSKKEDAAAISTAALATAAPPAPTAATPAVAAAVP
VPSATSPPPPQAPFGYPGDGVQQPAYTQHQSMDQFQPRMLPIQQDTMHHQVPLPPNGQMP
GFGLLSAPPPFPPMPQPGMPQPGMAQPGLAQPGMPQPTMPQPGMPQPGMPQPGVPQPGMA
QPGLAQPGMAQPGMPQPAMPQPGMAQPGVSPAPPVQPTFQSTFQPQNEPHSQKPHQQVEM
EVEQPCVTEVKRHVPESRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSP
RSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPI
ESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWD
VELGVTYIPWDKVKAEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAEASHTEP
VSPIPKPVPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLGMPPPGFGPG
VPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGISED
TTKDLSIGNPIPTVVSGARGNAESGDSAKMYGSAGPPAAPTSLPTPPVTQPVSLLGTQGV
APGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPMMPPRPMPPHMMHRGPPPGP
GGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGSEDRDGRQQQPQQQPPQQQQQ
QPPQQQPPQQSQSQQPAPSQQPAPAQQQPPQFRNDSRQQFNSGRDQERFGRRSFGSRVEN
DRERYGSRNDDRDNSNRERREWGRRSPDRDRHRDLEERSRRSSGHRDRDRDSRDRESRRE
KEENRGKEKHEVADRAGGNKAVEPPLSQVGTIDTVSELNKGEAMATVVKPEESPAEATSP
AGPEKDPGSAAEPPR
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagctcttctcacttatggatatgaagcctccc
atctctagagccaagatgattctcattactaaagctgctatcaaagctattaagctttat
aagcacgttgttcaaatagtagaaaagttcatcaaaaagtgtaagccagaatacaaggtt
ccaggcctgtatgtcatcgactccatcgtgagacagtctcggcaccagtttggaactgat
aaagatgtttttgggccaagattctctaaaaatataactgctacattccagtatttatat
ctttgtccatctgaagataagagtaaaatagttcgtgtgctaaatctttggcaaaaaaat
ggagtgttcaaaattgaaattattcagcctcttttggacatggcagcaggaaccagtaat
gctgctccagtagcagaaaacgtcaccaacaatgaaggctcacctccacccccagtaaaa
gtctcttctgaacttgcacaagctcccacaaactccatgcctactgtagcccagctgccc
agctccgatgcctttgctgctgtggctcagctgttccagacgactcaaggccagcagctt
cagcagatccttcagacttttcaacaacctccacaaccacagtctcccgcccttgacagt
gctgtgatggctcaggttcaggctatcacagctcagttaaagacagctcctacacagcca
cccgagcaaaaaactgcatttgacaagaagctgcttgatagattcgattatgatgacgag
ccagaagctgtggaagactcaaagaaagaggatgctgcagctatcagcaccgcagccctt
gccacggctgcgcctcctgcacccactgcagccacacctgctgttgccgcggctgtgcct
gtgccctctgctacctctccccctcctccacaggccccatttgggtaccctggagatggt
gtgcaacagccagcatacacacagcatcaaagtatggaccagtttcagcctcgaatgctg
ccaatacagcaggatacgatgcaccatcaggttccgcttcctcctaacggacagatgcca
ggatttgggcttctttctgcaccacctccatttcctcccatgcctcagccggggatgccg
cagcctgggatggctcagccgggattggcacagcctgggatgcctcagcctacaatgcca
cagccagggatgccacagccagggatgccgcagccaggggtgcctcagcctgggatggct
cagccaggattggcacagccggggatggctcagcctgggatgcctcagcctgccatgcct
cagccagggatggctcagcctggggtttctccagctccaccagtacagccaactttccaa
tcaacttttcagccacaaaatgaaccccattcacaaaaaccacatcagcaggtagaaatg
gaagtagagcagccttgtgttacagaggttaagcggcatgtgcccgagagcagaaagtcg
agatccaggtcagcatccaggtcaccaaaaaggagaagatctaggtctggctctaggtct
cggagatcccgccaccgtcgctctcggtctcggtccagggataggcgccgacactcacct
cgctctcgatctcaagaaagacgggatcgagaaaaagagagggaacggcggcagaaaggc
ctccctcagatcaagtcagaaactgccagtgtttgtagtaccacactgtgggtgggacaa
ctggacaaaaggactactcagcaggatgttgccagtctcttagaagagtttggcccaatt
gaatcaattaatatgattcctcccaggggctgtgcctacattgtcatggttcatagacaa
gatgcataccgtgccctgcagaaactgagccgaggaaactacaaagtgaaccagaaatcc
ataaagattgcctgggccttgaacaaaggaataaaggcggattataaacagtattgggat
gttgaacttggtgtcacttacattccgtgggacaaagtcaaagctgaggagctggagagt
ttctgtgaaggaggcatgctggacagtgacacacttaacccagattggaaaggcatcccc
aagaagcctgaaaatgaagttgcccagaatggaggtgcagaagcctcccacacagagcca
gtgtcccccatacctaagcctgtgcctgtgcctgtgcctcccattcctgttcctgcgcct
ataacagtgccacctccacaggtcccgccccatcagccgggccctcctgttgtcggtgct
ctccagccgcccgctttcacccctcccttaggaatgccccctccaggctttggccctggc
gttcctcctccccctcctcctccaccatttttgcgcccaggattcaacccaatgcattta
ccaccaggtttccttcctcctggacccccacctcctataactccaccagtatccattcct
ccacctcacactccaccaataagcatcccaaactctactatcgctggtataagtgaagac
actacaaaagacttatctattggaaatcccattccaacagtggtgtctggggctagagga
aatgccgagtctggtgacagtgcgaaaatgtatggttctgctgggccacctgctgcaccc
acgagtctgcccacccctcctgtaacccagcccgtgtcactgcttggcactcaaggagtt
gcgccgggtcctgtaattgggctccaggcaccctctaccggtcttcttggtgccagacct
ggcctgatcccactccagcgccccccagggatgcctccaccacatttgcaacggttccct
atgatgccacctcggcccatgccacctcacatgatgcacagggggccgccaccaggacca
gggggctttgccatgcccccacctcatggaatgaaagggcccttcccaccacatggcccc
tttgttaggcctggtgggatgccaggactggggggcccaggaccaggcccgggaggatca
gaagacagagatggaaggcagcaacaaccacagcagcagcctccgcagcagcagcagcag
cagcctccgcagcagcagccaccgcagcagtcacagtcacagcagccagcaccgtcacag
cagccagcgccagctcagcagcagccaccgcagtttagaaatgatagcaggcagcagttc
aactcaggtagagaccaagaaaggtttggaagaagatcttttggaagtagggtggaaaat
gaccgggaacggtatgggagccgtaatgacgatagagataatagtaaccgtgaaaggaga
gagtggggaagaaggagccctgaccgggacagacacagagacttggaagagagaagtaga
cgctctagtgggcatcgggacagagacagggattctagagatagagagtcccgtagagag
aaggaagaaaatcgaggaaaggagaagcacgaggtggcagacagggcaggtggtaacaaa
gctgtggaacctccccttagccaagtaggaaccatagacactgtctcagaacttaataag
ggggaggccatggccacggtggtaaagcctgaagagtcgcctgctgaggctacctcaccc
gctggacccgagaaggatcctggctcagcagcagagcctcctcgctag
DBGET
integrated database retrieval system
