Mycobacterium canettii CIPT 140010059: MCAN_06671
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Entry
MCAN_06671 CDS
T01585
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase (beta chain) RPOB (transcriptase beta chain) (RNA polymerase beta subunit)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mce
Mycobacterium canettii CIPT 140010059
Pathway
mce03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCAN_06671 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mce03021
]
MCAN_06671 (rpoB)
03400 DNA repair and recombination proteins [BR:
mce03400
]
MCAN_06671 (rpoB)
Enzymes [BR:
mce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCAN_06671 (rpoB)
Transcription machinery [BR:
mce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MCAN_06671 (rpoB)
DNA repair and recombination proteins [BR:
mce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MCAN_06671 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CCC43007
LinkDB
All DBs
Position
769908..773426
Genome browser
AA seq
1172 aa
AA seq
DB search
MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG
SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD
MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY
FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE
QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY
DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATVEYLVRLHEGQTTMTVPGGVEVPVE
TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA
IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI
ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS
PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL
MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT
RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW
EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE
RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK
VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF
LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA
QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG
YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
LREGEDEDLERAAANLGINLSRNESASVEDLA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
ttggcagattcccgccagagcaaaacagccgctagtcctagtccgagtcgcccgcaaagt
tcctcgaataactccgtacccggagcgccaaaccgggtctcctttgctaagctgcgcgaa
ccacttgaggttccgggactccttgacgtccagaccgattcgttcgagtggctgatcggt
tcgccgcgctggcgcgaatccgccgccgagcggggtgatgtcaacccagtgggtggcctg
gaagaggtgctctacgagctgtctccgatcgaggacttctccgggtcgatgtcgttgtcg
ttctctgaccctcgtttcgacgatgtcaaggcacccgtcgacgagtgcaaagacaaggac
atgacgtacgcggctccactgttcgtcaccgccgagttcatcaacaacaacaccggtgag
atcaagagtcagacggtgttcatgggtgacttcccgatgatgaccgagaagggcacgttc
atcatcaacgggaccgagcgtgtggtggtcagccagctggtgcggtcgcccggggtgtac
ttcgacgagaccattgacaagtccaccgacaagacgctgcacagcgtcaaggtgatcccg
agccgcggcgcgtggctcgagtttgacgtcgacaagcgcgacaccgtcggcgtgcgcatc
gaccgcaaacgccggcaaccggtcaccgtgctgctcaaggcgctgggctggaccagcgag
cagattgtcgagcggttcgggttctccgagatcatgcgatcgacgctggagaaggacaac
accgtcggcaccgacgaggcgctgttggacatctaccgcaagctgcgtccgggcgagccc
ccgaccaaagagtcagcgcagacgctgttggaaaacttgttcttcaaggagaagcgctac
gacctggctcgcgtcggtcgctataaggtcaacaagaagctcgggctgcatgtcggcgag
cccatcacgtcgtcgacgctgaccgaagaagacgtcgtggccaccgtcgaatatctggtc
cgcttgcacgagggtcagaccacgatgaccgttccgggcggcgtcgaggtgccggtggaa
accgacgacatcgaccacttcggcaaccgccgcctgcgtacggtcggcgagctgatccaa
aaccagatccgggtcggcatgtcgcggatggagcgggtggtccgggagcggatgaccacc
caggacgtggaggcgatcacaccgcagacgttgatcaacatccggccggtggtcgccgcg
atcaaggagttcttcggcaccagccagctgagccaattcatggaccagaacaacccgctg
tcggggttgacccacaagcgccgactgtcggcgctggggcccggcggtctgtcacgtgag
cgtgccgggctggaggtccgcgacgtgcacccgtcgcactacggccggatgtgcccgatc
gaaacccctgaggggcccaacatcggtctgatcggctcgctgtcggtgtacgcgcgggtc
aacccgttcgggttcatcgaaacgccgtaccgcaaggtggtcgacggcgtggttagcgac
gagatcgtgtacctgaccgccgacgaggaggaccgccacgtggtggcacaggccaattcg
ccgatcgatgcggacggtcgcttcgtcgagccgcgcgtgctggtccgccgcaaggcgggc
gaggtggagtacgtgccctcgtccgaggtggactacatggacgtctcgccccgccagatg
gtgtcggtggccaccgcgatgattccattcctggagcacgacgacgccaaccgtgccctc
atgggggcaaacatgcagcgccaggcggtgccgctggtccgtagcgaggccccgctggtg
ggcaccgggatggagctgcgcgcggcgatcgacgccggcgacgtcgtcgtcgccgaagaa
agcggcgtcatcgaggaggtgtcggccgactacatcactgtgatgcacgacaacggcacc
cggcgtacctaccggatgcgcaagtttgcccggtccaaccacggcacttgcgccaaccag
tgccccatcgtggacgcgggcgaccgagtcgaggccggtcaggtgatcgccgacggtccc
tgtactgacgacggcgagatggcgctgggcaagaacctgctggtggccatcatgccgtgg
gagggccacaactacgaggacgcgatcatcctgtccaaccgcctggtcgaagaggacgtg
ctcacctcgatccacatcgaggagcatgagatcgatgctcgcgacaccaagctgggtgcg
gaggagatcacccgcgacatcccgaacatctccgacgaggtgctcgccgacctggatgag
cggggcatcgtgcgcatcggtgccgaggttcgcgacggggacatcctggtcggcaaggtc
accccgaagggtgagaccgagctgacgccggaggagcggctgctgcgtgccatcttcggt
gagaaggcccgcgaggtgcgcgacacttcgctgaaggtgccgcacggcgaatccggcaag
gtgatcggcattcgggtgttttcccgcgaggacgaggacgagttgccggccggtgtcaac
gagctggtgcgtgtgtatgtggctcagaaacgcaagatctccgacggtgacaagctggcc
ggccggcacggcaacaagggcgtgatcggcaagatcctgccggttgaggacatgccgttc
cttgccgacggcaccccggtggacattattttgaacacccacggcgtgccgcgacggatg
aacatcggccagattttggagacccacctgggttggtgtgcccacagcggctggaaggtc
gacgccgccaagggggttccggactgggccgccaggctgcccgacgaactgctcgaggcg
cagccgaacgccattgtgtcgacgccggtgttcgacggcgcccaggaggccgagctgcag
ggcctgttgtcgtgcacgctgcccaaccgcgacggtgacgtgctggtcgacgccgacggc
aaggccatgctcttcgacgggcgcagcggcgagccgttcccgtacccggtcacggttggc
tacatgtacatcatgaagctgcaccacctggtggacgacaagatccacgcccgctccacc
gggccgtactcgatgatcacccagcagccgctgggcggtaaggcgcagttcggtggccag
cggttcggggagatggagtgctgggccatgcaggcctacggtgccgcctacaccctgcag
gagctgttgaccatcaagtccgatgacaccgtcggccgcgtcaaggtgtacgaggcgatc
gtcaagggtgagaacatcccggagccgggcatccccgagtcgttcaaggtgctgctcaaa
gaactgcagtcgctgtgcctcaacgtcgaggtgctatcgagtgacggtgcggcgatcgaa
ctgcgcgaaggtgaggacgaggacctggagcgcgccgcggccaacctgggaatcaatctg
tcccgcaacgaatccgcaagtgtcgaggatcttgcgtaa
DBGET
integrated database retrieval system
