KEGG   Momordica charantia (bitter melon): 111024977Help
Entry
111024977         CDS       T05045                                 

Definition
(RefSeq) DNA ligase 6-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03030  DNA replication
mcha03410  Base excision repair
mcha03420  Nucleotide excision repair
mcha03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111024977
   03410 Base excision repair
    111024977
   03420 Nucleotide excision repair
    111024977
   03430 Mismatch repair
    111024977
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mcha03032]
    111024977
   03400 DNA repair and recombination proteins [BR:mcha03400]
    111024977
Enzymes [BR:mcha01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111024977
    6.5.1.6  DNA ligase (ATP or NAD+)
     111024977
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     111024977
DNA replication proteins [BR:mcha03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    111024977
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     111024977
DNA repair and recombination proteins [BR:mcha03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     111024977
   NER (nucleotide excision repair)
    Other NER factors
     111024977
   MMR (mismatch excision repair)
    Other MMR factors
     111024977
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DRMBL UBA_4 RMMBL Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 111024977
NCBI-ProteinID: XP_022158501
LinkDB All DBs
Position
Unknown
AA seq 1430 aa AA seqDB search
MASDSPTHIHQTIDSSLSFVTAIELFSRHSHLPLLPPPLPFRPPPFPSDFPQSKLIPKSR
FVVDAFGLAGDYSVSYFLSHFHSDHYGGLSISWCKGIIFCSDTTARLLLEVLKVPSPFVR
PLPLREPVAIDGCEVILIDANHCPGAVQFLFKIPGGDGKLERYVHTGDFRFCDSMRVDPI
LEEFIGSDAIFLDTTYCNPKFIFPTQEESIEYIVNIIQKIGGASKGSMGNVLFLVATYVI
GKEKILLEIASRCNRKIMVDARKMTVLRVLGHGESGVFTELESESDVHVVGWNILGDTWP
YFRPNFVKMNDIMVEKGYSKVVGFVPTGWTYEVKRNKFSVRSKDSLEIHLVPYSEHSNYN
ELREYVKFLRPRRVVPTVGSDVDKLDSKHTNKIKKHFAGLVDEMANRKEFLKGFHRGSSE
MSDDVYDNDAKAVNEFRDLEEKEISSCMKMSVKTEACSSGMGFSSLKEVGSTDLNDEDKR
KIIQELRECLPAWVTQDQMLDLISSSGRNLVDAVSNFYERETEFCEHITTLTENLPKFQS
KVLDVPFTFHTTDIKKKIVLGKFEISSSQDSKASSPRCMAKSNASPGKRKRNIQEKPQNR
SKKNSSLQSSGSKKKSSLQSSGSKKILSLQSGGSKQSTITKFFRKASHLSEGDKMESTVE
QSCQDQSTSYDINKDTNKIDRFIQIINGDESLKQLVTSLLVETNGDINMALDLYYANPQE
RLGQNEKGHIFSGNPIQIESNLDECLSTQKEKMAENFGLETDFSKLSSSTKKINEPLVSL
PPEKYDPVEHACWRCGQPAPYIHLVRTFDLLEEEKGKIKATSMLCNMFRSLLVLSAEDVL
PAVYLCTNKIAADHENMELNIGGSLVTAALEEACGVSRSKITEMYNELGDLGDVALACRQ
TQRLLAPPSPLLIKDVFSTLRKISVQTGSGSTARKKSLIMNLMRSCREKEMKFLVRTLVR
NLRIGAMLKTVLHALAQAVFISSSLNMYKEGMVANLKEKLQYFSAAVLDAYNVLPNFDLI
VPSLMGKGIEFSSSSLSMVPGIPIKPMLAKITNGIPQALKIFENKAFTCEYKYDGQRAQI
HKLADGSVRVFSRNSDDTTSKFPDLINIINELCKPAASTFILDAEVVAVDRRNNCRLMSF
QELSSRGRGSKGLLIAVDSIKVDICIFVFDIMLANGEQLLGLPLRHRRKYLKDLFRDERP
GYFEYAKEITIEKDDACLNCESTLIKVSSFLGDALQSSCEGIMVKSLDVDAGYSPSKRND
TWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWFSPFLMACYNPDNEEFQSVCRVMSGF
SDAFYIEMKEFFSGDKILCKKPPYYRTAEAPDMWFLPEVVWEIRGADLTVSPVHQAAVGL
VHPSRGISIRFPRFIRSVRDRNPEECSTATDIVGMFNSQTRKMDVVASGD
NT seq 4293 nt NT seq  +upstreamnt  +downstreamnt
atggcttccgattctcccacccatatccaccaaactatcgactcttccctctccttcgtc
actgccattgaattgttttcacggcattcacatctgcctcttcttccgccgccgctccca
ttccggccccctccttttccgtccgattttccccaatccaaactgatccctaaatcccgc
ttcgtcgtcgacgctttcggtctcgccggcgattactctgtttcctatttcctctctcat
tttcactccgatcactatggcggtctctccatcagttggtgcaagggtatcatcttctgc
tctgacaccactgcccgccttctcctcgaggttctcaaagtcccttcgccgtttgtccgg
ccattgccgctccgcgagcccgtcgcaattgatggctgtgaggtaatactaattgatgcg
aatcattgtcccggtgcggtgcagttcttgtttaagattccgggtggggatggaaaattg
gagagatatgttcatacgggtgattttcggttttgtgattctatgagagtcgaccctatt
ttggaggaatttattggctcagatgctattttcttggacactacttactgtaacccgaag
tttatttttcctacccaggaggagtctattgaatatatagtgaacatcatacaaaaaatt
ggaggtgcaagtaagggttctatggggaatgttcttttccttgtagcaacttacgtaata
ggaaaagaaaaaattttgcttgaaattgcaagtagatgtaatcgtaagataatggtggat
gctagaaaaatgacagttttacgggttttgggacatggtgagagtggggtatttacagag
cttgaaagtgaaagtgacgttcacgttgttggatggaatattttgggtgatacttggcct
tattttagacctaattttgttaaaatgaatgatataatggtggaaaaggggtattctaaa
gttgttggttttgttccgacagggtggacttatgaggtcaaacgtaacaagttctcagta
aggtccaaggattcacttgaaattcatctcgtgccatacagtgaacattcaaactacaat
gaactcagggaatatgtgaagtttttaagaccgagaagggttgttcccaccgtaggctcg
gatgtcgataaacttgacagcaagcatactaataaaattaagaagcattttgctggttta
gttgatgaaatggccaacagaaaagaatttctaaaaggctttcatcgtggatccagtgaa
atgagtgatgatgtttatgataatgatgcaaaggctgtaaatgagttccgagacttggaa
gagaaggaaatttcatcatgtatgaagatgagcgtcaaaaccgaagcatgcagtagtggt
atggggttctcttctctaaaagaagttggttctacagatctaaatgatgaggataaaaga
aaaattattcaggaacttcgcgagtgcttacctgcatgggtcactcaggatcagatgtta
gacctgattagcagctcagggagaaatcttgttgatgcagtttctaatttctatgaacga
gaaactgaattttgtgaacatattactactctcacggagaatcttcccaagttccagagc
aaagtacttgatgtcccatttacgtttcatacaacagatataaaaaagaagattgttttg
ggaaagtttgaaatttcttcaagccaagattcaaaggcatccagtccaaggtgcatggcc
aagagtaatgcttctcctggaaaaaggaagagaaacattcaggagaagccacaaaatagg
tcaaaaaagaattcaagtttgcaatctagtgggtcaaaaaagaaatcaagcttgcaatct
agtgggtcaaaaaagattttaagtttgcaatctggtgggtcaaagcaatctacaataaca
aagttcttcaggaaagcttcacatttgtcggaaggtgataaaatggaatctacagtggag
caaagttgtcaagatcaaagtacgtcatatgatattaacaaagatacaaacaagatagac
aggtttattcagataataaatggtgatgagtcattaaaacaacttgttacatcattatta
gtggaaacaaatggagacattaatatggcgctagatttgtactatgctaaccctcaggag
aggcttggtcagaatgaaaagggtcacatcttcagtgggaacccaatccaaattgaaagc
aatttggatgaatgcttatctacgcaaaaggaaaagatggcagaaaattttggactcgag
actgatttttctaagctgtcaagttcaacgaagaagataaatgaacctcttgtatcctta
ccacccgaaaagtatgacccggttgagcatgcatgttggcggtgtggacagcctgcccca
tatatacatcttgtacgaacctttgatcttcttgaagaggaaaaaggcaagataaaagct
acatctatgctctgcaatatgttcagaagtttattggttttgtctgctgaggatgtgctg
cctgcagtgtatctgtgcactaataaaattgctgctgaccatgaaaacatggaactaaat
attggtgggagtctggtcacagcagcattggaagaggcatgtggggttagccgatccaag
ataacggaaatgtacaatgaattaggcgatctaggagatgttgctcttgcatgtcgccaa
acacaaagattattggcacctccatcacccctcctgattaaggatgtattttccactctt
cgaaaaattagtgtacaaacaggtagtggaagtactgcacgtaagaaaagcctcattatg
aatctcatgcgttcttgcagagaaaaggaaatgaaatttcttgtaagaaccttggttcgt
aacttacgaataggagccatgttgaaaactgttcttcatgctctggcccaagctgttttc
ataagttcctccctcaacatgtacaaggaaggaatggtagcaaatttgaaggagaagctt
cagtacttttcagctgctgtacttgacgcatacaatgtgcttcctaattttgatctgatt
gttccttctcttatgggaaaagggattgaattctcttcatcgtctttatcaatggttcca
ggaatacccattaagccaatgcttgcaaaaattaccaatggtattcctcaagcattgaaa
atctttgagaataaagcttttacatgtgaatacaaatatgatggtcagcgtgcccaaatt
cacaaattggctgatggttctgtgcgagttttctctcgaaacagtgatgatacaacatca
aaatttccagatttgatcaatataattaacgaactatgtaagcctgctgcctcaactttc
atactggatgctgaggttgttgcagttgataggagaaataattgcagactgatgtctttc
caagaattatcatcacgcgggagagggagcaaagggttgctgattgcagttgatagcata
aaggttgatatttgcatttttgtctttgacataatgcttgccaatggggagcagctgctg
gggttacctctccggcatagacgaaaatacttgaaggatttgtttcgtgatgagaggcct
ggatattttgaatatgcgaaggaaatcacaatcgaaaaggatgatgcctgcttaaactgt
gaatccactttgattaaagtaagttctttccttggagatgcactccaatcatcgtgtgaa
ggaattatggtcaaatctttagatgtggatgctggatattctccctcaaagcgtaatgat
acatggttaaaggtaaagcgggattatgttgaaggmttgaatgattctcttgatttagtc
cctatcggtgcttggcatggaaatggaagaaaagccggatggttcagccctttcctcatg
gcctgttacaatcctgacaatgaggaatttcaaagcgtatgtcgtgttatgtcggggttc
tctgatgcattttacattgagatgaaagaatttttctctggcgataagattttgtgtaaa
aagccaccttactatcgaactgctgaggcccctgatatgtggttcttgccagaagttgtt
tgggaaataagaggtgcagacttaacagtgtcaccagttcaccaggctgctgtaggttta
gttcatccttctcggggcatctcaatcaggtttccgagatttattcgttcagttcgagat
agaaatccagaagaatgtagcacggctacagatatagttggcatgtttaattctcagaca
aggaagatggatgttgttgcatcaggagattga

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