KEGG   Mycobacteroides chelonae: BB28_05145Help
Entry
BB28_05145        CDS       T04665                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mche  Mycobacteroides chelonae
Pathway
mche03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mche00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BB28_05145
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mche03400]
    BB28_05145
Enzymes [BR:mche01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BB28_05145
DNA repair and recombination proteins [BR:mche03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BB28_05145
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ANA97200
LinkDB All DBs
Position
1017961..1020312
Genome map
AA seq 783 aa AA seqDB search
MERISPVWPTGAAQSATSGAVSTAFVRLTNPDKVLYPPTGTTPATTKADVFGYYTAIAPF
MLPHLAGRPVTRKRWPNGVEQPSFFEKDLASSAPDWLPRRRIEHKSRYVTYPLIDTSVAL
AWIAQQAALEVHVPQWRFVGENPGPATRLVFDLDPGEGVELPQLAQVARAVRDVLGDIGL
TTFPLTSGSKGLHLYVPLAQPVSSSGAVTVARKVATQLEQSMPDLVTATMTRELRAGKVF
VDWSQNSGSKTTVAPYSLRGREAPTVAAPRTWDELDDPGLRQLRFDEVLARAERDGDLLA
GLDDVAIIEDKLSTYRSMRDPARTPEPVPAVEPQAGPDSSFVIQEHHATALHYDFRLERD
GVLVSWAVPKNLPMEPSVNHLAVHTEDHPLEYGTFEGTIPKGEYGAGEVTIWDSGTYDTE
KFIDPRDGSSANGGVKGEVIVTLHGKRISGRYALIQTDGKQWLAHRMKDQRSPGAMPVGL
APMLPTTGSVAGLTADEWAFEGKWDGYRLILECDRGRLRAVARSGRDVTEEFPALRQLAR
ELGEHRVVLDGEVVVLDSKGLPSFSLLQNRTPSADIRFWAFDLLYLDGNSLLRTKYRDRR
RLLDVLGAGTEMMTVPEQLNGDGDAALAHSHERGWEGVVAKRLDSAYAPGRTQSWIKAKN
WRSQEIVIGGWRKGQGGRSSGIGALLMGIPAPDGLRYAGRVGTGFTEKELASLKEQLEPL
HCDKSPFSAPLSAVEAKDVQFVEPVLVAEVRYGDRTPGGILKHSSWRGLRTDKSVGDVEL
DLG
NT seq 2352 nt NT seq  +upstreamnt  +downstreamnt
atggaacgcatatccccagtatggcccaccggagccgcgcagtccgcgacatccggtgcg
gtatcaactgcgttcgtgcggctcaccaatccggacaaggtgctgtatccgccaaccgga
accactccggccaccaccaaggcggacgttttcggctactacaccgccatcgctccgttt
atgctgccccacctcgcggggcgcccggtcacccgtaaacggtggcctaacggcgttgag
cagccgtccttcttcgagaaggacctcgcgtcgtcggcccccgactggcttccccggcgg
cgtatcgagcacaaatcccgctacgtcacctacccgttgatcgacacctcggtggcactg
gcctggatcgcccagcaggcggcactggaagtgcatgtgccgcagtggcggtttgtcggc
gaaaatccaggaccagcaacacgattggtattcgatctggatccaggcgaaggcgtggag
ctaccgcagctggcgcaggtcgcccgcgcggtgcgcgatgtgctcggcgatatcgggctg
accacctttcccctgaccagtgggagcaaggggctgcacctgtatgtgccgctggcgcag
ccggtcagttcatccggtgcggtgaccgtcgcgagaaaggtcgcgacgcaactggagcag
tcgatgccggacctggtcaccgcgacgatgacccgggaactacgtgcaggcaaggttttc
gtggattggagtcagaacagcggttccaagacaacggttgccccttactcgctgcgtggc
cgcgaggcgccgaccgttgccgcaccccgtacatgggacgaattggacgacccaggactg
cgccagttgcggtttgacgaagtcctggcgcgcgccgagcgtgacggtgatctgctggca
gggctcgatgatgtggcgattatcgaagacaagctgtcgacgtatcgcagcatgcgcgat
ccggcgcgcactcccgaaccggtgcccgccgtcgaaccgcaagccggtcccgatagttcg
tttgtgattcaggaacatcacgccaccgcgctgcattacgactttcggttggagcgtgac
ggtgtgctggtctcgtgggcggtccctaagaatctgcccatggagccgtccgtcaatcac
cttgcggtgcataccgaggatcacccgctcgaatacgggacctttgagggcaccattccg
aagggggagtacggcgccggtgaggtcaccatctgggactcgggaacctatgacaccgag
aagttcattgatccacgcgacggctccagcgccaacggtggggtgaagggagaagtcatt
gtcaccctgcatggcaagcgaatctcggggcggtatgcgctgattcagaccgatggcaag
cagtggctggcgcatcgcatgaaggatcagcgctcacctggcgcaatgccagttggcctc
gcgccgatgctgccgactaccggatctgtggcgggcctgaccgccgatgagtgggcattc
gaaggtaaatgggatggttaccgtctcatcctcgaatgcgaccgcggtcggctgcgggcc
gtggcgcgcagtgggcgcgacgtcaccgaggagttcccggccttgcggcaacttgcccgt
gaattgggtgagcaccgtgtggttctcgatggtgaggtggtggtgctggattccaagggg
ctgccgagcttctcgttgttgcagaatcggacgccgagtgccgatatccgattctgggcg
ttcgatctgctgtatctggatggaaattccctgctgcgcaccaagtatcgtgaccggcgc
cgcctgctcgacgtgctgggggccggcaccgagatgatgaccgttcccgagcaactgaac
ggcgacggagatgcggcgctggctcattcgcatgagcggggctgggagggcgtcgtcgcc
aaacggctggattcggcttacgctccgggccgcacccagtcctggatcaaggcgaagaac
tggcgcagccaagagatcgtgatcggtggttggcgtaaggggcaaggcggacgcagcagt
ggtatcggtgcgctgctgatggggataccggcgcccgacggacttcgttatgccggacgg
gtgggcaccggattcaccgaaaaagagctggcctcgctcaaggagcagctggagccgttg
cactgtgacaaatcacccttcagcgcaccgctttccgcggtcgaggccaaagatgtgcag
ttcgtcgaaccggtcctggtcgccgaggttcgctacggtgatcgcacgcccggcgggatt
ctcaagcactccagctggcgtggtctgcgcaccgataagtcagttggcgacgtcgagctc
gatctcggctag

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