KEGG   Mycobacterium chimaera: AN480_05800Help
Entry
AN480_05800       CDS       T04926                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mchi  Mycobacterium chimaera
Pathway
mchi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mchi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AN480_05800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mchi03400]
    AN480_05800
Enzymes [BR:mchi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AN480_05800
DNA repair and recombination proteins [BR:mchi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AN480_05800
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: APD83959
UniProt: A0A220Y8B1
LinkDB All DBs
Position
1187616..1189883
Genome map
AA seq 755 aa AA seqDB search
MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGDGVTMAQMSKVARAVRDLIAGIGLSTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARDGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFLDDEVIVNLH
GSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGKWDG
YRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVPNFHE
MQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDGREAL
EHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLL
MGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYVRPEL
VGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq 2268 nt NT seq  +upstreamnt  +downstreamnt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatccttcttcgagaagcaactcgccgcgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgctggaggttcacgtcccgcagtggcggttcgtcgctgag
tggacccgcagccgggccgaagaactcaagcccggaccggcgacgcgattggtgttcgac
ctcgaccccggcgacggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcgggctgagcaccttcccgctcaccagcggcagcaagggactg
catctgtatgcgccgctcgacgagccggtgagcagcaaaggcgccacggtgttggccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagctcgtcacgtcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacc
atcgcaccgtattccctgcgcggacgcgagcatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgacggcgatctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaagacccccgagccggttccggcggcgaaa
cccgctgtcggtcaaggaaacaccttcgtcatccaggaacaccacgcgcgacgtctgcac
tacgatttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccatctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttccttgacgacgaggtcatcgtcaacctgcac
ggcagcaagatatccggacgctacgcgctgattcaaaccaatggcgaccagtggttggca
catcggatgaaggaccagaaggtcttcgagttcgacaccatcgcacccatgctggccacc
cacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggcaaatgggacggt
taccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcgcgacgcggtcgc
gaagtcacccaggaataccgcgaactgcgctggctggcagacgatctcgccgaccatcac
gtggtgctcgacggggaggccgtcgtgctggactcctccggggtgcccaactttcacgag
atgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgacctgctctacctc
gacggccgctcgttgctgcgagcccgttaccgggatcggcgaaaactgctggaaatgctg
gccgccggcagcaggctgatcgtccccgacctactgcccggcgacggcagagaggcgcta
gagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgcgactccacctat
cagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaacacccaggaagtc
gtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatcggctcgctgctg
atgggtatccccaccgcgggcgggctgcacttcgccgggcgcgtcggcaccgggttcacc
gaccgcgacctggccaacttgaagaagacgctggcgccgctgcacaccgacgaatccccc
tttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtgcgcccggagctg
gtgggggaggtgcgctacagcgagtggaccccggatgaccggttacgccaatcgagttgg
cgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga

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