Mesorhizobium ciceri biovar biserrulae: Mesci_1192
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Entry
Mesci_1192 CDS
T01401
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mci
Mesorhizobium ciceri biovar biserrulae
Pathway
mci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mesci_1192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mci03019
]
Mesci_1192
03400 DNA repair and recombination proteins [BR:
mci03400
]
Mesci_1192
Enzymes [BR:
mci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mesci_1192
Messenger RNA biogenesis [BR:
mci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mesci_1192
DNA repair and recombination proteins [BR:
mci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Mesci_1192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADV10356
UniProt:
E8TLX1
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All DBs
Position
1250028..1251869
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AA seq
613 aa
AA seq
DB search
MQAPAALATEELDPKRRVLKDVFGFDDFRPGQADVMDALLAGRHVLAVMPTGAGKSLCYQ
VPALVLGGLTIVVSPLVALMQDQVAALRLAGVAADTINSSIDRDANIAAWRRVASGQTRL
LYLAPERLMTERMLEALARLDISLIAVDEAHCISQWGPAFRREYEDLSRLRGIFPSVPII
ALTATADEGTRTDIESRLFAERVETLVLGFDRPNIKLAIEAKQDSKRQLLRFVERHPGRS
GIVYCLSRKKTEEMAAFLEKNGVTALAYHAGMSKEARDANQNSFMTLSGVVMVATIAFGM
GIDKPDVAYVFHTDMPGSLEAYYQEIGRAGRDGRDAEAHMLFGLGDIRMRRLFIDDEDAP
PEHKRRSHGRLDTLIGYCETAQCRRQVLLGYFGEEAQPCGNCDTCLDQAPRADGGAEARI
ILTAIAQSGERFGAGHVIDILLGHETEKVLARNHQRLTSFGSGLAHKKDFWLSLIRQLVA
GGFLMPDPAGHGGLAIAEKGHALGRGEVPFHYRVEVRSRALRGKMRSGQDLGQSAVDTGL
LAALKSLRLRLAKERQVPAYVVFSDRTLIDMAERRPNDLDAFAEVNGVGAAKLKEFGQVF
LSAIAEHRSGEAA
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcaccggcggccctcgcgacagaagagctggatcccaagcggcgcgtgctgaag
gacgtgttcggcttcgatgattttcgccccgggcaggccgatgtcatggacgcgttgctg
gccgggcgtcatgtgctggctgtcatgccgactggtgccggcaaatcgctctgctaccag
gtgccggcgcttgtcctgggcgggctcaccattgtcgtttcgccgctggtggcgctgatg
caggatcaggtcgccgccttgcggcttgccggcgtggccgccgatacgatcaattcctcg
atcgaccgcgatgccaatattgccgcatggcgtcgcgtcgcctcgggccagacgcgcctg
ctctatctcgcgccggagcggttgatgaccgaacggatgctcgaggcgctggccaggctc
gatatcagcctgatcgccgtcgacgaggcgcattgtatctcgcaatgggggccggcgttc
cggcgcgaatacgaggacctgtcgcgtctgcgcggcatctttcccagcgtgccgatcatc
gcgctgacggcaacggcggacgaaggcacgcgcaccgacatcgaatcccggctgtttgcc
gagcgcgtcgagaccctggtgctgggcttcgaccggccgaacatcaagcttgccatcgag
gccaagcaggacagcaagcgccaattgctgcgcttcgtcgagcgccatcccggccgcagc
ggcatcgtctattgcctgtcgcgcaagaagacggaggagatggcggccttcctcgagaag
aacggcgtcaccgcgctcgcctatcatgccggcatgagcaaggaggcgcgtgacgccaac
cagaacagcttcatgaccttgtccggcgtcgtcatggtggcgaccatcgccttcggcatg
ggcatcgacaagcctgacgtcgcctatgtcttccacaccgacatgccgggcagcctggag
gcctactaccaggagataggccgcgccggccgcgatgggcgggacgccgaggcgcatatg
ctgttcggcctgggcgatatccgcatgcgcaggttgttcatcgacgacgaggatgcgccg
cccgagcacaagaggcgctcgcatggccggctcgacacgctgataggctattgcgagacg
gcgcagtgccgccgccaggtgctgctcggctatttcggcgaggaagcgcagccctgcggc
aattgcgacacctgcctcgaccaggcaccgcgcgccgatggcggagccgaggctcggatc
atcctgacggcgatcgcccagagcggtgagcgtttcggtgccggtcatgtcatcgacatc
ctgctcggccatgaaaccgagaaggtgcttgccaggaaccaccagaggctcacgagtttc
ggcagtggtctggcgcacaagaaggatttctggctatcgctgatccggcaactcgtcgcc
ggcgggttcctgatgccggatccggccggtcatggcggcctcgccatcgccgaaaagggt
catgcgcttggccgtggcgaggtgccgttccattatcgtgtcgaggtacgcagccgcgcc
ttgcgcggcaagatgcgctccgggcaggatctcgggcagtcggctgtggacaccgggcta
ctggccgcgctcaaatccttgcgcctgcggctcgccaaggagcgccaggtgccggcctat
gtggtgttctccgatcgcacgctgatcgacatggcagagcgccgcccgaacgacctcgac
gccttcgctgaagtgaatggggttggggcggcaaagctcaaggaattcggccaggttttt
ctgagtgcgattgccgagcaccggtcgggtgaggcggcctga
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