Methanobacterium congolense: MCBB_2239
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Entry
MCBB_2239 CDS
T04503
Symbol
rpa
Name
(GenBank) Replication factor A
KO
K07466
replication factor A1
Organism
mcub
Methanobacterium congolense
Pathway
mcub03030
DNA replication
mcub03420
Nucleotide excision repair
mcub03430
Mismatch repair
mcub03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mcub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCBB_2239 (rpa)
03420 Nucleotide excision repair
MCBB_2239 (rpa)
03430 Mismatch repair
MCBB_2239 (rpa)
03440 Homologous recombination
MCBB_2239 (rpa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcub03000
]
MCBB_2239 (rpa)
03032 DNA replication proteins [BR:
mcub03032
]
MCBB_2239 (rpa)
03400 DNA repair and recombination proteins [BR:
mcub03400
]
MCBB_2239 (rpa)
Transcription factors [BR:
mcub03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MCBB_2239 (rpa)
DNA replication proteins [BR:
mcub03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MCBB_2239 (rpa)
DNA repair and recombination proteins [BR:
mcub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MCBB_2239 (rpa)
MMR (mismatch excision repair)
MCBB_2239 (rpa)
DSBR (double strand breaks repair)
HR (homologous recombination)
MCBB_2239 (rpa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Rep_fac-A_C
REPA_OB_2
Ssb-like_OB
POT1PC
MlaD
TF_Zn_Ribbon
DASH_Dad4
DZR_2
DZR
zinc-ribbons_6
PADR1_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
SCG86778
UniProt:
A0A1D3L5E6
LinkDB
All DBs
Position
I:2298012..2300399
Genome browser
AA seq
795 aa
AA seq
DB search
MSGEVNDEIMKEYERIKDKISYEDFLKKMEERKKEYEDVSFMSDLDIARTITGEYIDEKN
EALSEGNKPQKISQLTAGHDNVCVIGRIMSVSNVKKFTNRKGNHGKLANMIIADETGQIR
VTLWTENVKFLDEVIEGDVVKLNRVEVKQGFRNENNEIQTSRDSKLEKITDGNFEELPKY
EEKLTNLADVKGESTVNVVARIIRIPRVRTFDRNGNDGKVMSLEIQDKTGQMQLTLWNND
VGIVEDLKLKEGDSIKVLGAQSRLRNGEVSLTHSWRGRIIKGEFDVPEYDEDILKIGDAH
EMKNVTVIGVVCKNYDKITFERNDGSKGQVKSIEMQDETGSIRVTLWNDDADMKLEKGSI
IKITGGNIEFDEYSGTDYRINTNWNTKIDEDPEIDDKLRENLQKCGDYIKPVEISTLNEM
DDEGDEVDIIGRIISVQDPSEFQRTDGTSGTVRTVEIGDATGVVRTSFWDEKAEKSLNPG
DAVKIENARTRFGNYNMELSVGRTSRLMEPSEEETKNLPSLSEIEEKIYKTKHVDELEEG
DQNIRLLGRILNVYDPNQFQRSDGTQGIVRTVEIADGTGTVRASFWDEKANLPMKAGDTI
KIENPRVNYRDGNIEISISRNTVVTKPKEDETGKLPSLDEIQDMIYKNRKIEDVEEEDRN
IKVTGQIVEAYGNKILYEMCPNCNKRVNFSENAYICDICGEEIDEPNYLMIISCVMEDET
GTMRATFFRKAAEEFIGMTTDEVRDVIAKTGDEGSLEDKVADMVGQEITIIADASYDEYN
EEIRLNAKKVVSLKI
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtgaagttaacgatgaaataatgaaggaatacgaaagaattaaggataagatc
tcatatgaggacttcctgaagaaaatggaagaaaggaagaaggaatatgaagatgtaagt
ttcatgagtgacctcgacatagccagaacaataactggcgaatacatagatgaaaagaac
gaagcattatctgaaggcaataaacctcaaaagatatcccaacttactgcaggacatgat
aatgtctgtgtcattggacgcataatgagcgtgtcgaatgttaaaaaattcacaaataga
aagggaaatcatggaaaactcgcaaatatgatcatagccgatgaaaccgggcaaataagg
gtaactctctggactgaaaatgttaaatttctcgatgaagttattgaaggagacgttgtg
aagttgaaccgtgtggaagttaaacagggtttccgaaatgaaaacaatgagatacagaca
agcagagattctaagcttgaaaaaattacagatggaaattttgaagaacttccaaagtac
gaggaaaagttaactaacctggcggatgtaaagggtgaaagtactgttaacgttgtagcc
aggatcattcgcatccccagggtcagaacctttgacagaaatggtaatgacggaaaggta
atgtcccttgaaatacaggacaaaaccgggcagatgcaattaacactatggaacaacgat
gtgggtatcgttgaagatctcaaactcaaggaaggagactccatcaaagtacttggagct
caaagccgtttgcgaaatggagaagtttcattaactcattcctggcgtggaagaataatc
aaaggggaatttgatgttccagagtacgatgaggatatccttaaaataggcgatgcccat
gagatgaagaacgttaccgtgataggggttgtgtgtaaaaattacgacaaaataaccttt
gaaagaaatgacggcagcaaaggtcaggttaaatccattgaaatgcaggatgaaacagga
agcataagggtcaccctctggaacgatgacgcagatatgaaacttgaaaagggatccata
atcaagataaccggcggaaacatcgaatttgacgaatattccggtacagattaccggata
aacactaactggaacactaaaatcgatgaagatcctgaaatagatgataaacttagggaa
aacctccaaaaatgtggagattatattaaaccagttgaaatatcaaccttaaatgaaatg
gatgatgagggagacgaagttgacataatcggaaggatcatcagcgtccaggaccccagt
gaattccagagaacggatggaacaagtggaaccgttcgaaccgttgaaattggagatgct
acaggtgttgtgagaacctccttctgggatgaaaaggctgaaaaatctttaaaccctggt
gatgccgtgaagatcgaaaatgccaggacaagatttggaaattacaacatggaactcagc
gttggaagaacttccagattgatggaaccaagtgaagaagaaaccaaaaatctcccctct
ttaagtgaaatagaagaaaaaatctacaaaactaaacatgtagatgaattagaagaagga
gaccagaacataaggctccttggaaggatactgaatgtttacgatccaaaccagttccag
agaagtgacggaacccagggaatagttcgaaccgttgaaatagccgatggcacaggaact
gttagagcatcattctgggatgaaaaggcaaacttgccaatgaaagctggcgacacaatc
aaaatcgaaaatccaagggttaactacagagacggaaatatagaaatcagtataagcaga
aacaccgttgttacaaaacctaaggaagatgaaactggaaagttaccatctttagatgaa
attcaggatatgatctataaaaacagaaagatcgaagatgttgaagaggaagatagaaat
atcaaggtaactggacaaattgtggaagcctatggaaacaaaatactctatgagatgtgt
ccaaactgtaataaaagggtcaatttctctgaaaacgcatacatctgtgacatatgtgga
gaagaaatagacgaacccaactacctcatgataatatcctgtgtcatggaagatgaaacc
gggaccatgagggccaccttcttcaggaaagcagctgaagagttcattggaatgaccact
gacgaagttagagatgttatagcaaaaactggagatgaaggttccctcgaggacaaagtc
gcagatatggtgggtcaggaaataaccataattgcagatgcaagttacgatgaatacaac
gaagaaataaggctcaacgcaaagaaagtagtttctttaaagatctaa
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