Methylomonas sp. DH-1: AYM39_13005
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Entry
AYM39_13005 CDS
T04396
Name
(GenBank) SPO1 DNA polymerase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
mdh
Methylomonas sp. DH-1
Pathway
mdh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AYM39_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdh03400
]
AYM39_13005
Enzymes [BR:
mdh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
AYM39_13005
DNA repair and recombination proteins [BR:
mdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AYM39_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ANE56004
UniProt:
A0A172UA09
LinkDB
All DBs
Position
complement(2923988..2924635)
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AA seq
215 aa
AA seq
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MLDSNCFNQDCRDCQRLAGFLDNVKLKYPDYHAQPVAPFGDPAAQLLVVGLAPGMHGANA
SGRPFTGDYAGLLLYQALYDFGFSNQADSAALDDGLVLNNCRITNAVKCLPPQNKPTGDE
IKRCNRYLAAEIDTLPDNAVILALGNIAHQAVLRAYGLKSSAAKFGHHQCFQLPGGNVLV
SSYHCSRYNVQTKRLSMAMLADVFATIRSLLAGRD
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgttggattcgaattgctttaaccaggattgtcgggattgccagcgtttggcaggattt
ctcgataacgtcaagcttaaataccctgattaccacgcccagccggttgcgccgttcggc
gatcctgcagcgcagttgctggtggtcggtctggcgccgggtatgcacggcgctaatgcc
agcggccggcctttcacgggagattatgccgggctgctgctgtatcaagccttgtacgat
ttcggtttcagtaatcaagcggattcggccgctctagacgatggcttggttttgaacaat
tgccggatcaccaatgcggtgaaatgtctgccgccgcaaaataaaccgaccggcgacgaa
attaaacgctgcaatcgttatctggccgccgagatcgatactttaccggacaatgccgtc
attttggctttgggtaatatcgcccaccaagccgtgttgcgcgcttatggcttgaaaagt
agtgccgccaaattcggccatcaccagtgttttcagttacccggcggcaatgttttggtc
agctcctaccattgcagccgctacaatgtgcagacgaagcgtttgagcatggcgatgctg
gccgacgtatttgcgaccattcgatctttgttggcgggccgtgactga
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