KEGG   Malus domestica (apple): 103405797Help
Entry
103405797         CDS       T03194                                 

Definition
(RefSeq) DNA ligase 6
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103405797
   03410 Base excision repair
    103405797
   03420 Nucleotide excision repair
    103405797
   03430 Mismatch repair
    103405797
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103405797
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103405797
Enzymes [BR:mdm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103405797
    6.5.1.6  DNA ligase (ATP or NAD+)
     103405797
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103405797
DNA replication proteins [BR:mdm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    103405797
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     103405797
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103405797
   NER (nucleotide excision repair)
    Other NER factors
     103405797
   MMR (mismatch excision repair)
    Other MMR factors
     103405797
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_N DRMBL UBA_4 RMMBL Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 103405797
NCBI-ProteinID: XP_017179793
LinkDB All DBs
Position
17
AA seq 1050 aa AA seqDB search
MASSSSSVTRTPTLDSTHLFLAALAAFSHQPNPPHPSFPPIPSTFPHSKLIPKTRFAVDA
FRHAGDHSVSYFLSHFHSDHYGGLSPNWAKGVVFCSPITARLLTEVLKVSPHFVVALPLG
EAVVIDGVKVVLIDANHCPGAVQFLFKIPDMNGKFERYVHTGDFRFSGSMKLDPFLCEFV
GSDAVFLDTTYCNPKFVFPSQQESVDYIASVIERVGGECKSEMKNVLFLVATYVIGKEKI
LLEIAHRCNRKVHVDARKMAVFRVLGYGENGVFTEDECESDVHVVGWNVLGETWPYFKPN
FVKMKEIMAERGYSKVVGFVPTGWTYEVKRNKFSVRSKDSFEIHLVPYSEHSNYEELREY
VRFLKPKRVVPTVGLDVEKLDSKHASKMQKHFAGLVDEMANKKEFLKSFRLGSKEVADSV
ENESNKGPILGLGEEKEALSYDKDIVGNSIISLGIELSSSLQEPDRQNQVVLNDEEAEKI
VQELRDCLPTWVTHEQMLVLIGSTGGDIVEAVSNFYERETEFHEQVNASRIADSVSQTTS
TCDSASLPKAGSDKSSPCGSTDIPLSQDYISLMPRNMIKSGISPGKRASKVNXKVNKKLK
LNSKLDSGGPKQLAITRFFSKVLPNVPETAVAGSLHEQNPKYENLLNDDTKSYRDEIHQF
LQIIDGDESLESYAATILEEANGDINKALNIYYSNREGRSGENEEELVXNEKSVQFHCHX
NNCSSDKEKTQSRKMEPTTDSSVQVSLPVNVNITFVSLPPEKYNPIEHACWRNGQNAPYL
HLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPDDVLPSVYLCTNKIAADHENVELNIG
GSLVTSALEEACGTSRSKIREMYSELGDLGDVAQACRQTQKLLAPPSPLLIKDVFSALQK
ISVQTGSGSTVRKKSLILNLMRSCREKEMKFLVRTLVRNLRIGAMMKTVLPALAQAVVIN
SSYNFNNEGRVENMKDKLQRHSAAVVEAYNVLPNLDLVVPSLMDKGVGFSSSTLAMVPGI
PIKPMLAKITNGVQQALKLFENKAFTCEYK
NT seq 3153 nt NT seq  +upstreamnt  +downstreamnt
atggcctcctcctcctcttccgtgaccagaaccccaacccttgattccacccacctcttc
ctcgccgccctcgccgccttctcccaccaacccaaccctccccatccctctttccctcca
attccctccacattccctcactccaaactcatccccaaaacccgtttcgccgtcgacgca
ttccgccacgccggcgatcactccgtctcctacttcctctcccatttccactccgatcac
tacggcggcctctcccccaattgggctaaaggcgtcgtcttttgttctccgatcaccgcc
cgtcttctcactgaggtgctcaaggtctctcctcatttcgttgtcgctctgccgctgggc
gaagccgttgtaatcgatggggtgaaggttgtrctgattgacgctaatcactgtccgggt
gcggttcagttcttgtttaaaattccggatatgaacggaaagtttgagaggtatgttcat
actggcgattttaggttttcgggttcaatgaagttagacccttttctgtgtgaatttgtg
ggttccgatgctgttttcttggacactacgtattgtaatccgaaatttgtgtttccttca
caacaagagtctgtagattatattgctagtgtgatagaacgagttgggggtgaatgtaaa
agtgaaatgaaaaatgttttgtttcttgtagctacttatgtaattggaaaagagaagatt
ttgcttgaaatygcgcataggtgtaatcgtaaggtgcatgtggatgctcgtaaaatggca
gtttttcgtgttttgggttatggagagaatggggtatttacagaggatgaatgtgaaagt
gatgtacatgttgttgggtggaatgtcttgggtgagacttggccatattttaagcctaat
tttgtgaaaatgaaggagattatggccgaaagaggatactctaaggttgtgggttttgtt
cctactggttggacttatgaagtgaarcgtaataagttttcggttaggtcgaaggattcg
tttgagatccatcttgtaccatatagtgaacattcaaactatgaagaacttagagaatat
gtgaggtttttgaaaccaaagcgtgttgttcctacagtgggcttggatgttgaaaagctt
gatagtaagcacgccagtaaaatgcaaaagcattttgctgggttagttgatgaaatggca
aacaagaaggagttcttgaagagctttcgtcttgggtctaaagaagtagctgacagtgta
gaaaatgagtccaacaagggccccattttggggctcggtgaggagaaagaggcactgtca
tatgataaggatatagtaggaaatagtattatcagtttaggcattgaattatcatcttct
ctacaagaacctgatcgacaaaatcaagtggtgttaaatgatgaggaagcagaaaaaatc
gtccaagaacttcgtgattgtttgcccacatgggtcacccatgagcagatgctagttttg
attggtagcackggaggggacatcgttgaagcagtttctaatttctacgaacgcgagaca
gaatttcatgagcaagtaaatgcttctagaattgctgattctgtgtcccagactacctca
acttgtgactctgcatcacttccaaaagcaggytctgataagagcagtccatgtggaagt
actgacattcctttaagtcaagattatatctcacttatgccaaggaatatgattaaaagt
ggaatatctcctgggaaaagggcragtaaagttaayartaaggtaaacaaaaarttgaaa
ttaaattcraaattggattcaggcgggccraagcaactggcaataacaaggttttttagt
aaagtcttaccaaatgttccagaaactgcggtggctggttcattgcatgaacaaaaccct
aaatatgaaaatttgctcaacgatgacacmaaatcwtacagggatgagatacatcagttt
cttcagataatagatggtgatgaatcgctagagagctatgctgccaccattctggaggag
gcaaatggagatatcaataaagcgctwaatatatattactctaatcgygaaggaaggtcc
ggtgagaatgaagaagaattggtgrttaatgaaaaatcagttcagttccactgccacrta
aataattgctcttccgacaaagagaaaactcagtcaaggaaaatggaaccaacaactgat
tcgtctgtgcaggtttcattaccagtgaatgtaaatataacttttgtgtctctaccacca
gaaaaatacaatcctatagaacatgcttgctggaggaatggacagaatgctccatattta
catcttgcaagaacttttgacttacttgaggatgaaaagggcaagataaaagctacttcc
atgctctgcaacatgttcagaagtttgcttgccttgtctcctgatgacgtgctgccttca
gtgtatttgtgcacaaataagatcgctgctgaccatgaaaatgtggagctaaacatyggt
ggaagtttggtcacatcagcactggaagaagcatgtgggacaagccgatccaaaataagg
gagatgtacagtgagctgggtgatctaggtgatgttgctcaagcatgccggcagacacaa
aagttacttgcccctccttcaccgttgttaataaaggatgtattttctgcactccaaaag
ataagtgtacaaacaggtagtggaagcaccgttcgaaagaaaagcctcattttgaatcta
atgcgctcttgtagagagaaagagatgaagtttcttgttagaactttggtcaggaattta
cgaattggagcaatgatgaaaactgttctacctgctctggctcaagctgttgtcattaac
tcctcrtataacttcaataatgaaggaagagtagaaaatatgaaagataagcttcagcgt
cattcagctgctgtagtcgaagcgtacaatgttctgcccaatttggatttggtcgttcct
tccctcatggacaagggcgttggattttcttcgtcaaccttggcaatggttccaggaata
cctattaagccaatgcttgcaaagatcacgaatggtgttcagcaagcactgaagctcttt
gaaaataaagcttttacatgtgaatacaagtaa

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