Methylomonas denitrificans: JT25_016175
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Entry
JT25_016175 CDS
T04191
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mdn
Methylomonas denitrificans
Brite
KEGG Orthology (KO) [BR:
mdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdn03032
]
JT25_016175
03400 DNA repair and recombination proteins [BR:
mdn03400
]
JT25_016175
Enzymes [BR:
mdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JT25_016175
DNA replication proteins [BR:
mdn03032
]
Prokaryotic type
DNA Topoisomerases
JT25_016175
DNA repair and recombination proteins [BR:
mdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JT25_016175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
Toprim_4
RNA_POL_M_15KD
Motif
Other DBs
NCBI-ProteinID:
AMK77998
UniProt:
A0A126T7G8
LinkDB
All DBs
Position
3488888..3491209
Genome browser
AA seq
773 aa
AA seq
DB search
MSKSLVIVESPAKCKTIEKYLGKDFQVLASYGHVRDLIPKEGAVDPENGFAMKYQVIDRN
QRHLQEIGKAIKNVDTLYLATDPDREGEAISWHVFEHLKEKKLLKDKEVLRVVFHEITKK
AVTEAIAHPTELSNNLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRMIV
EREMEIEAFKTREYWSHTAEASAQGLPFKAKLTYFNGEKLNQFSFTDEVQANQVKQSLLD
AADGQLIVAKTEKKQRNKHPAPPFITSTLQQEAARKLGFTTKRTMMVAQQLYEGIDLGGE
TVGLISYMRTDSVNLAEEALADIRALIAEKYGADDVPKEPRRFKTKSKNAQEAHEAIRPT
SVQRLPEQVKNRLSAEQFKLYDLIWKRTVACQMIHATLNQVAVDLNCGSEKNVFRATGSV
VTNPGFMKVYLEGVDDSKEAADDQDSLLPPMEEGRPVVLNDIAATQHFTEPPPRYSETSL
VKALEEHGIGRPSTYATIISTLQNREYVTIDNKRFYPTDVGRIVNKFLTEHFTKYVDYSF
TANLEDDLDAVSRGEKDWIPLMNDFWRPFTQLINEKEESVQRKDVTQESIDEQCPDCGSP
LSIRLGRNGRFIGCTNYPTCSYTRNLGDDNAGATSAEPEVVEGRVCPKCESTLVIKTGKY
GKFVGCSAYPKCKHIEPLEKPSDTGVECPQCKKGAILKRKARSGKIFYSCSEYPKCDYAL
WDAPIKESCPDCNWPILTLKTTKRRGTEKVCPQKECKYATPYEGDPGDVNGPV
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaagtttagtcattgtagagtcaccggccaaatgcaaaaccatagagaagtat
ctgggtaaggacttccaggtattggcctcttacggccacgtccgcgatttgattcccaaa
gagggagcggtagacccggaaaacggttttgcgatgaaatatcaggtgatcgaccgcaac
cagcgccatctgcaagagataggcaaagccatcaagaacgtcgatacgctctatctcgcg
actgacccggatagagaaggcgaggcgatttcctggcatgtgttcgagcatcttaaagaa
aaaaagctgttaaaagacaaggaagtgttgcgggtggtgtttcatgaaatcaccaaaaaa
gccgtcaccgaggctatcgcccatcccaccgaattatccaataatctggtcaacgcccaa
caggcgcggcgcgctctggactatctagtcggttttaatttatcgccgttgctgtggaag
aaaatccgtcgaggcttatcggccggccgtgtgcaaagtccggctttgcggatgatcgtc
gagcgcgaaatggaaatcgaagcgttcaaaacccgagaatactggtcgcatacggctgaa
gccagcgcgcaggggctaccgttcaaagccaagctcacatatttcaatggcgaaaagctg
aatcagttcagttttaccgacgaagtgcaagccaaccaagtcaaacaaagcttgttggat
gccgctgacggtcagttgatcgttgccaaaacggagaaaaaacaacgcaataaacaccct
gcgccgccgtttatcacttcgactttgcaacaggaagcggcccgtaagctgggttttacc
accaagcgcacgatgatggtcgcgcaacagttgtacgaaggcatcgatttgggcggagaa
accgtcggtttgatttcttatatgcgtaccgattcggtcaatctggccgaagaggcgctt
gccgatattcgcgcgctgatcgcggaaaaatacggtgccgacgatgtgccaaaagagccg
cgccgtttcaaaaccaaatctaaaaacgctcaggaagcgcacgaagccataaggccgacg
tccgtgcagcgcttgcccgagcaggtgaaaaaccggctcagtgccgagcaattcaagctc
tacgacttgatctggaaacgcacagtcgcctgccagatgattcacgctaccttgaaccaa
gtggcggtggatctcaattgcggcagcgagaaaaatgtatttcgcgctaccggttccgtg
gtgactaatcccggcttcatgaaggtgtatctggaaggtgtagacgacagcaaggaagcc
gccgacgatcaggacagtttgttgccgccgatggaagaagggcggccggtggtgctgaac
gacatcgcggcaacccagcattttaccgagccaccaccacgctacagcgagacgagcttg
gtaaaagccttggaagaacatggcatcggccggccgtctacgtacgcgacgattatctcg
accttgcaaaaccgcgaatatgtgacgatcgacaacaagcgattttacccgaccgacgtg
gggcgcatcgttaacaagttcttgaccgagcatttcacgaaatacgtcgactatagtttt
accgccaatctggaagacgatctggatgcggtgtcgcgcggcgagaaggattggattccg
ttgatgaacgacttctggcggccgttcacgcagttgatcaacgagaaagaagaaagcgtg
cagcgcaaggatgtgacgcaggagagcatcgacgagcagtgcccggactgcggcagtccg
ctgtcgattcgcttgggccgcaacggccgctttattggatgtaccaattatccgacctgc
tcatacactcgaaatctgggtgacgataatgccggtgccacatcggccgagcctgaagtg
gtggaagggcgggtgtgtccgaagtgcgagtcgacgctggtgataaaaaccgggaaatac
ggtaagtttgtcggttgtagcgcttatccgaaatgtaaacacatcgaacccctggaaaag
ccatccgataccggtgtcgagtgtccgcaatgcaaaaaaggcgcaatcctgaagcgaaag
gcgcgtagcgggaagattttttattcctgctcggaatacccaaaatgcgattatgccttg
tgggatgcgccgattaaggagagttgcccggactgcaactggccgattttgaccttaaaa
accactaagcgccgcggaaccgaaaaagtctgcccgcagaaagagtgcaaatacgccacg
ccttacgagggtgatccgggcgatgtaaacgggccggtgtaa
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