Monodelphis domestica (gray short-tailed opossum): 100019354
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Entry
100019354 CDS
T01031
Symbol
COL1A1
Name
(RefSeq) collagen type I alpha 1 chain
KO
K06236
collagen type I alpha
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo04151
PI3K-Akt signaling pathway
mdo04510
Focal adhesion
mdo04512
ECM-receptor interaction
mdo04611
Platelet activation
mdo04820
Cytoskeleton in muscle cells
mdo04926
Relaxin signaling pathway
mdo04933
AGE-RAGE signaling pathway in diabetic complications
mdo04974
Protein digestion and absorption
mdo05146
Amoebiasis
mdo05165
Human papillomavirus infection
mdo05205
Proteoglycans in cancer
mdo05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100019354 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100019354 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100019354 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100019354 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100019354 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100019354 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
100019354 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100019354 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100019354 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100019354 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100019354 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100019354 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mdo00536
]
100019354 (COL1A1)
Glycosaminoglycan binding proteins [BR:
mdo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100019354 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100019354
NCBI-ProteinID:
XP_001367735
Ensembl:
ENSMODG00000011945
LinkDB
All DBs
Position
2:complement(203583932..203612085)
Genome browser
AA seq
1455 aa
AA seq
DB search
MFSFVDPRLLLLLAVTAVLTHGQDEEDIPEGTCIQNAIKYNNGEVWKPKICQICVCDNGS
ILCDEIICEDVSNCPNVQYKDDECCPSCLGADAVASPSSLTEIGVEGPKGDTGPRGERGP
PGLPGKDGKPGNPGIQGPPGLPGIPGLGGNFASQMSYGYDEKSGGGMSVPGPMGPSGPRG
LPGPPGNPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPG
PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDSGPAGPKGEPGSPGENGAPGQMGPRGLPG
ERGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGSRGSEGPQG
VRGEPGPPGPAGAAGPSGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPG
PKGNSGEPGAPGNKGDPGAKGEPGPVGVQGPPGPAGEEGKRGSRGEPGPSGLPGPAGERG
GPGSRGFPGADGVAGPKGAPGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG
PDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG
AAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDAG
APGPSGARGERGFPGERGVQGPPGPQGPRGSNGAPGNDGAKGDAGAPGAPGGQGPPGLQG
MPGERGAAGLPGAKGDRGDAGPKGADGAAGKDGVRGLTGPIGPPGPAGPTGDKGESGPSG
PVGPTGARGAPGERGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPTG
APGPAGNVGAPGPKGARGNAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKG
PRGETGPIGRPGEVGPPGPPGPSGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG
ERGFPGLPGPSGEPGKQGPSGISGERGPPGPAGPPGLAGPPGESGREGSPGAEGSPGRDG
SPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPTGARGPSG
PQGPRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAG
ASGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPAGPPGPPSGGFDFSFLPQPPQEK
AHDSGRYYRADDANVRDRDLEVDTTLKSLTQQIENIRSPEGTRKNPARTCRDLRMCHSDW
KSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPKVPLKNWYINKNPKDKKHVWFGES
MTDGFQFEYGGEGSDPADVAIQMTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALL
LQGSNEIEIRAEGNSRFTYGVTEDGCTSHTGNWGKTVIEYKTTKTSRLPIIDVAPMDIGA
PNQEFGCDVGPVCFL
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatccccggctcctgcttctcttagcagtcactgccgtcctcacc
cacggccaagatgaagaagacattccagaaggcacctgtatacagaatgccataaagtac
aacaatggggaggtgtggaaaccaaagatctgtcaaatctgtgtctgcgacaatggaagc
atcctgtgtgacgaaataatctgtgaagatgtttccaactgccccaatgtgcagtacaag
gacgatgaatgctgcccctcctgccttggtgccgatgctgttgcttcaccatcctctctc
acagaaataggagtcgagggtcccaaaggagatactgggcctcgaggtgaaaggggaccc
ccaggcctacctggaaaagatggcaaaccaggaaatcctggtattcagggcccccctggt
ctccctggtatccctggccttggaggaaactttgcttcccagatgtcttatggctatgat
gagaaatcaggtggtggcatgtctgttcctggacctatgggtccctctggtcctcgtggt
ctccctggtcctcctggcaacccaggtccccaaggtttccaaggtccccctggtgaacct
ggcgagcctggagcttcaggtcccatgggtccccgaggccctgcaggtccccctggcaag
aacggagatgatggtgaagctggcaaacctggtcgtcccggcgaacgtggtcctcctggt
cctcagggtgctcgaggtctgcctggaactgctggtctccctggcatgaagggacaccgg
ggtttcagtggtttggatggtgccaagggagacagtggtcccgctggtcccaagggtgag
cctggtagccctggtgagaatggagctcccggacaaatgggccctcgtggtcttcctggt
gagagaggccgccctggacctcctggcccagctggtgctcgtggtaacgatggcgcaaca
ggtgctgctggacccccaggtcccaccggtcctgctggtccccctggtttccctggtgct
gttggtgctaagggcgaagctggtccccaaggatctcgaggctctgaaggtccccagggt
gtccgtggagagcctggtccccctggccctgctggtgctgctggcccatctggtaaccct
ggtgctgatggacaacctggtgccaaaggtgccaatggtgctcctggaattgctggtgct
cctggcttccctggtgcccgtggtccttctggacctcagggtcccagtggtgctcctggt
cccaagggtaatagtggtgaacctggtgctcctggtaacaaaggtgaccccggtgccaag
ggagagcccggccccgttggtgttcaaggacccccaggccctgcaggagaggaaggcaag
agaggatcccgtggtgaacctggaccttctggtctgcccggcccagctggtgaacgaggc
ggtcctggtagccgtggcttccctggtgctgatggtgtcgctggccctaagggtgcccct
ggtgaacgtggtgctcctggccccgccggtcccaaaggatctcctggtgaagctggtcgc
cctggtgaggctggtctacctggtgccaagggtctgactggaagccctggaagccctggt
cctgatggcaaaactggtcctcctggtcccgctggtcaagacggtcgccccggacctcca
ggcccccctggtgcccgtggtcaagctggtgtaatgggattccctggacccaagggtgct
gctggagaacctggcaaggctggagagagaggtgtccctggaccccctggtgctgtgggt
gctgctggaaaagatggagaagctggtgctcaaggtccccccggccctgctggtcctgct
ggtgagagaggtgaacagggtcctgctggttcccctggattccagggtctccctggccct
gctggccctcctggtgaagctggcaagcctggtgaacagggtgttcctggagatgctggt
gcccctggcccctctggcgcaagaggtgagagaggtttccctggagaacgtggcgtgcaa
ggtcctcccggccctcagggtccccgtgggtccaatggtgctcccggcaatgatggtgct
aagggtgatgctggtgctcctggtgctcctggtggccaagggccccctggtctgcaagga
atgcccggtgaacgtggtgcagctggccttcctggtgccaagggtgacaggggtgatgct
ggtcccaaaggcgctgatggtgctgctggcaaagatggtgtacgtggtctgactggtccc
atcggtcctcctggccctgctggtcctactggtgacaagggtgaatctggtcccagcggc
cccgttggtcccactggagctcgtggtgcccctggagaacgtggtgagcctggcccccct
ggtcctgctggctttgctggtccccctggtgctgatggccaacctggtgctaaaggtgaa
cctggtgatgctggtgctaaaggtgatgctggcccccctggccctgctggacccactggt
gcccctggccctgctggtaatgttggtgctcctggacccaaaggtgcccgtggcaacgca
ggtcctcctggtgctactggtttccctggtgctgctggaagagttggtccccctggcccc
tctggtaatgctggaccccctggacctcctggccctgctggcaaagaaggcggcaaagga
ccccgtggtgagactggccccattggacgtcctggtgaagttggacctccaggtccccct
ggcccaagtggagagaagggatctcctggtgctgatggccctgctggtgctcctggtact
cctggacctcaaggtattgctggacagcgtggtgtggtgggtctgcctggacagagagga
gaaagaggtttccctggtcttcctggcccctctggtgaacccggaaaacaaggtccttct
ggaataagtggcgaacgtggcccccctggccctgctggcccccctggattggctggaccc
cctggtgaatctggacgagagggctctcctggtgctgaaggctcccctggtcgggatggt
tctccaggccccaagggtgaccgtggtgagactggtcctgctggcccccctggtgctcct
ggtgcccccggcgctcctggccctgtaggtcctgctggaaaatctggagatcgtggtgag
actggtcctgctggtcctgctggtcctgttggtcccactggtgcccgtggaccttctgga
ccccaaggcccccgtggtgacaagggtgagacaggtgaacagggagacagaggcatgaag
ggtcacagaggcttctctggtctccagggtccccctggtcctcctggttctcctggtgaa
caaggtccttctggagcttccggtcccgctggcccccgaggtccccctggctctgctggt
gcttctggaaaagatggactcaatggtcttcctggccccatcggtccccctggtccccgt
ggtcgtactggagatgctggtcctgctggtccccctggacctcctggacccgctggtcct
cctggtccccccagtggtggattcgacttcagcttcctgccccagccaccccaggagaag
gctcacgactctggccgctattacagagctgatgatgctaacgtgcgtgaccgtgacctt
gaagttgacaccaccctcaagagcctgacccaacagattgagaacatccgaagccctgag
gggactcgaaagaaccctgcccgcacctgcagagacctcaggatgtgccactcagactgg
aagagcggagagtactggattgatcccaaccaaggctgcaacctggatgccatcaaggtc
ttctgcaacatggagactggagaaacctgtgtgtaccccacccaacccaaagtgcccctc
aagaactggtacattaacaagaaccccaaggacaagaagcacgtctggttcggcgagagc
atgaccgatggattccagttcgagtatggtggcgagggctccgaccctgctgatgtggct
attcagatgaccttccttcgcctgatgtccacggaggcctcccagaacatcacctatcac
tgcaagaacagcgtggcctacatggaccagcagaccggcaacctcaagaaggctctgctt
ctccaaggctccaatgaaattgagatccgtgctgaaggcaacagccgattcacctatgga
gtcactgaagatggctgcacgagtcacaccggaaactggggcaagacagtcatcgaatac
aagaccaccaaaacctcccgcctgcccatcatcgatgtggcccccatggacattggcgcc
cccaaccaggaatttggctgcgacgtgggtcccgtctgcttcctgtaa
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