Monodelphis domestica (gray short-tailed opossum): 100023528
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Entry
100023528 CDS
T01031
Symbol
PABPC1
Name
(RefSeq) poly(A) binding protein cytoplasmic 1
KO
K13126
polyadenylate-binding protein
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03015
mRNA surveillance pathway
mdo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100023528 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
100023528 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdo03019
]
100023528 (PABPC1)
03041 Spliceosome [BR:
mdo03041
]
100023528 (PABPC1)
Messenger RNA biogenesis [BR:
mdo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100023528 (PABPC1)
mRNA cycle factors
Stress granule specific factors
100023528 (PABPC1)
Spliceosome [BR:
mdo03041
]
Complex C
Other components
Complex C specific factors
100023528 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
100023528
NCBI-ProteinID:
XP_016287328
Ensembl:
ENSMODG00000006222
LinkDB
All DBs
Position
3:complement(366000213..366015669)
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVMVCDENGSKGYGFVHXETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFE
RHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVK
NLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA
TKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPPSGYFMAAIPQTQNRAA
YYPASQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQR
VANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQG
QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE
SLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccctatggcctcgctctacgtgggggatctgcacccc
gatgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccctgggctacgcttatgtcaacttccag
cagccggcggacgctgaacgagcattagatacaatgaattttgatgtcattaagggcaag
ccagtgcgtatcatgtggtctcaacgtgatccatcactacgtaaaagtggtgtgggcaat
atattcatcaaaaatttggataaatccattgataataaagcattgtatgatacattttct
gcttttggaaacatcctttcttgtaaggtaatggtatgtgatgaaaatgggtcaaagggc
tatggatttgtacacnttgagacacaagaagctgctgaaagagctattgaaaaaatgaat
ggaatgcttcttaatgatcgcaaagtctttgttggtcgatttaaatcccgtaaagaaaga
gaagcagaacttggagctagagcaaaagaattcaccaatgtttacatcaaaaattttggt
gaggacatggatgatgaaagacttaaggagctctttggcaagtttggacctgctttaagt
gtaaaagtaatgactgatgaaagtggaaaatccaaaggctttggctttgtgagctttgaa
agacatgaagatgcacagaaagctgtagatgagatgaatggaaaagaactgaatggaaaa
caaatttatgttggccgagctcagaaaaaagtagaacgacagacggaacttaagcgcaaa
tttgaacaaatgaagcaggataggatcaccagataccagggtgtgaacttgtacgtgaaa
aatcttgatgacggtattgatgatgagcgtcttcgaaaagaattctcaccatttggtaca
attactagtgcaaaggtgatgatggaaggtggccgcagcaaagggtttgggtttgtatgt
ttctcttcgccagaggaagccaccaaagcagtcacagaaatgaatggcaggattgttgcc
actaagccattgtatgtagctttagcccaacgcaaagaggaacggcaggctcacctcaca
aaccagtatatgcagagaatggcaagcgtcagagctgtgcccaaccctgtaatcaaccct
tatcagcctccttcaggttacttcatggcagctattcctcagactcagaaccgtgctgcg
tactatcctgctagccaaattgctcaactcagaccaagtcctcgctggactgctcagggt
gccagacctcatccattccagaacatgcccggtgctatccgcccagcagctcctaggccg
ccatttagtacaatgagaccagcttcttcacaggttccacgagtcatgtcaacacagcgt
gttgcaaacacatcaactcagacgatgggtccacgtcccgcagctgctgctgctgcagct
actcctgctgtccgcacagttccacagtataagtatgctgcaggtgttcgcaatcctcaa
cagcatcttaatgcacaaccacaggttaccatgcagcagcctgctgttcatgtgcaaggt
caggaacctttaactgcttccatgctggcatccgcccctcctcaagagcaaaagcagatg
ttgggtgaacggctgtttccactcattcaggctatgcaccccactctggctggtaaaatc
actggcatgttgctagaaattgacaactctgagcttcttcatatgcttgagtctcctgag
tctctccgttctaaggttgatgaagctgtagctgtactgcaagctcaccaagctaaagaa
gctgcccagaaagcagttaacagtgccactggcgttccaactgtttaa
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