Mycolicibacterium doricum: MDOR_29840
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Entry
MDOR_29840 CDS
T06662
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mdr
Mycolicibacterium doricum
Pathway
mdr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MDOR_29840 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdr03400
]
MDOR_29840 (mfd)
Enzymes [BR:
mdr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MDOR_29840 (mfd)
DNA repair and recombination proteins [BR:
mdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MDOR_29840 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
DUF1474
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBZ08815
UniProt:
A0A1X1TJN0
LinkDB
All DBs
Position
complement(3022132..3025794)
Genome browser
AA seq
1220 aa
AA seq
DB search
MTVSGHPSVQTPIAGLVEFALQDPCLADLARRAAGKPDDLSMVGPASARLFVTAALAQAG
PLLAVTATGREADDLTAELRGVLGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH
PDDPRLGPPLRVVVTTARSLAQPMAAGLAEVEPVTLAVGTEIEFEQVIARLVGLAYTRCD
MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV
PCRELLMSDEVRSRAAVLAAAHPTHEHTVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTE
LAMLSDHLPDSAPILVCDPEKVRTRAGDLIKTGREFLEASWSAAAFGDASTAPIDLEAMG
ASGFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSVRGQQHSVEEIFAMLRAH
VATGGYAAVVTPGAGTAQRVVEQLGENDAPAARLEPGAEPEPGVVGVLKGPLHDGVVLPG
ASLVIVTEADLTGSRVAATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFLEMTERV
VGGARREYLVLEYASGKRGAGKDGSDRLYVPMDSLDQLSRYVGGESPSLSKLGGSDWANT
KTKARRAVREIAGELVSLYAKRQAAPGHAFGPDTPWQNEMEDAFGFTETVDQLTAIQEVK
ADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTTRM
SGFPVTVKGLSRFTDPAQSRAVLEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIVVDEEQR
FGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQ
DDKQVAAALRRELLRDGQAFYIHNRVRTIDQAAAKIAALVPEARVVVAHGQMPEEMLEKT
VEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY
FLYPPDQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD
LYVRLVGEAVEAYRAAYSASLEGKTVATPEETKDVRIDLPVDANLPPDYIGSDRLRLEAY
RRLAAAADDAGVDAVVDELVDRYGPLPEPAQRLVGVARLRLLCREFGITDVSSVSASTVK
LSPMELPDSGQLRLKRMYPGGGYRATTRTVTVPIPRAADSVGSPRIRDAELVAMVAGLIL
ALNGKPQAQVDMAKIGGPRA
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtatcggggcacccatctgtccagaccccgatcgcgggtctcgtcgaattcgcg
ctacaggatccgtgcctggccgatctcgcgcgccgcgccgccggcaaacccgacgacctg
tcgatggtcgggccggccagcgcgcggctgttcgtcaccgcggcgctcgcccaggccggt
ccgctgctcgccgtcaccgccaccggccgtgaggccgacgatctgaccgcagagctgcgc
ggtgtcctcggcgactcggcggcgctcttcccgtcctgggagacgcttccgcacgagcgg
ctctcacccggagtcgacaccgtcggggcgcggatgatgctgctgcgccggctggcgcat
cccgacgacccgcgcctgggcccgccgctgcgggtggtggtgaccacggcacgctcactg
gcgcagccgatggcggccggtctggccgaggtggaaccggtcacgctggccgtcggcacc
gagatcgaattcgagcaggtgatcgcccgactggtcggtttggcctacacccggtgcgac
atggtggccaagcgcggtgagttcgccgtccggggcggcatcctcgacgtcttcccgccg
accgccgaacatccggtccgggtcgagttctggggtgacgagatctccgagatgcggatg
ttcgccgtcgccgaccagcggtccatcccggagatcgaggtcgacaccgtcatcgcggtg
ccctgccgcgagctgctgatgagcgacgaggtgagaagtcgcgccgctgtgctcgccgca
gcccacccgacccacgagcacaccgtcccgggcagcgtgcccgacatgctggccaaactc
gccgaaggcatcccggtcgacgggatggaggcactgctaccgctgctgcgcccgaccgag
ctggcgatgctgtccgaccacctgccggactcggcgccgatcctggtgtgcgacccggag
aaggtgcgcacccgcgccggggacctgatcaagaccgggcgggagttcctcgaggcgtcg
tggtcggctgctgcattcggtgacgccagcacagccccgatcgacctggaggcgatgggc
gcgtccggcttccttgggttcgaggaggtgcgcaccggcgctcgggccggcggccacccg
tggtggacgctgagccagctgtccgacgagaaggcgatcgaactcgacatccggtcggcg
ccgtcggtgcgcggacagcagcactcggtcgaggagatcttcgcgatgctgcgcgcgcac
gtggcgacgggcggctacgccgccgtcgtgacacccggtgcgggcaccgcccagcgcgtc
gtcgaacaactcggcgagaacgacgctcccgcagcgaggctggagcccggcgcggaaccg
gagcccggtgtcgtcggcgtgctcaagggcccgctgcacgacggggtcgtcctgccgggc
gcctcgctggtgatcgtcaccgaggccgatctgaccggcagccgcgtcgcggccaccgag
ggaaagcggctggccgccaaacgtcgcaacgtcgtcgacccgctggccctgaccgccggc
gacctggtggtccacgatcagcacggcatcggccggttcctcgagatgaccgaacgcgtc
gtcggcggggcgcgccgtgagtatctcgtgctggagtacgcatcggggaagaggggcgct
ggaaaggacggctcggaccggctgtacgtgccgatggactccctcgaccagctgtcgcgc
tatgtcggcggcgagtcgccgtcgctgtccaaactcggcggcagcgactgggccaacacc
aagaccaaggcgcgccgggccgttcgtgagatcgccggcgaactggtgtccctgtatgcc
aagcggcaggccgcgccgggccacgccttcgggccggacacgccgtggcagaacgagatg
gaggacgcgttcgggttcaccgagaccgtcgaccagctcacggccatccaagaggtcaag
gccgatatggaaaagccggtgccgatggaccgggtgatctgcggtgacgtcggttacggg
aagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggtaagcaggtggcc
gtgctggtgccgacgacgctgctggctgatcagcatctgcagaccttcaccactcggatg
tccggcttccccgtcaccgtcaagggcctgtcgcggttcaccgaccccgcgcaatcgcgt
gcggtgctcgaggggatgaaggacgggtcggtcgacatcgtgatcggcacacaccgcctg
ctgcagacgggggtggtgtggaaggacctcgggctgatcgtcgtcgacgaggagcagcgg
ttcggcgtggagcacaaagagcacatcaagtcgatgcgcacccacgtcgacgtgctcacc
atgagcgccaccccgatcccgcgcacgctggagatgagcctggccggcatccgggagatg
tcgacgatcctgacgccgccggaggagcgttacccggtgctgacgtacgtcgggccgcaa
gacgacaagcaggtcgccgccgcgttacgccgcgaactgctgcgcgacgggcaggcgttc
tacatccacaaccgggtgcgcaccatcgatcaggcggcggcgaagatcgcggcgctggtg
ccggaggcacgggtcgtggtagcccacggccagatgcccgaggagatgctcgagaaaacc
gtcgagggattctggaaccgggagtacgacatcctggtctgcaccacgatcgtcgagacg
ggtctggacatctccaatgccaacacgctgatcgtcgagcgcgcggacacgttcggcctg
tcccagctgcaccagttgcggggccgggtgggccgaagccgcgaacgcgggtacgcctac
ttcctgtatccgcccgaccagccgctgaccgagacggcctacgaccggctcgccacgatc
gcccagaacaacgaactgggcgcggggatggcggtcgcgatgaaggacctcgagatccgc
ggagccggcaacgtgctgggcgccgaacaatcgggtcacgtggccggcgtcggattcgac
ctctacgtgcgactggtcggtgaggccgtggaagcatatcgggcggcgtactccgcatct
ttggagggcaaaaccgttgccacaccagaggaaacgaaggatgtgcggatcgacctgccg
gtcgacgcgaacctgccgccggactacatcggcagtgaccggctgcggttggaggcgtac
cggcggctggccgcggccgccgacgacgccggggtggacgccgtcgtcgacgagctcgtc
gaccggtacgggccgctgccggaaccggcgcagcgtctggtcggcgtcgcccggctgcgt
ctgctgtgccgagaattcggcatcaccgacgtcagctcggtgtcggcgtcgacggtcaaa
ctgtcgccgatggagctgcccgactccgggcagctgcggctcaagcggatgtatccgggc
ggcggctaccgtgcgacgacgcggaccgtgacggtgccgattccgcgggcggccgacagc
gtcgggtcaccacgcatccgcgacgccgagctggtcgcgatggtggctggtttgatcctg
gccctcaacggaaagccgcaggcgcaggtcgacatggcgaagatcggggggccacgagca
tga
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