Mycolicibacterium duvalii: MDUV_24130
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Entry
MDUV_24130 CDS
T06492
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mdu
Mycolicibacterium duvalii
Pathway
mdu03030
DNA replication
mdu03410
Base excision repair
mdu03420
Nucleotide excision repair
mdu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MDUV_24130 (ligA)
03410 Base excision repair
MDUV_24130 (ligA)
03420 Nucleotide excision repair
MDUV_24130 (ligA)
03430 Mismatch repair
MDUV_24130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdu03032
]
MDUV_24130 (ligA)
03400 DNA repair and recombination proteins [BR:
mdu03400
]
MDUV_24130 (ligA)
Enzymes [BR:
mdu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MDUV_24130 (ligA)
DNA replication proteins [BR:
mdu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MDUV_24130 (ligA)
DNA repair and recombination proteins [BR:
mdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MDUV_24130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MDUV_24130 (ligA)
MMR (mismatch excision repair)
DNA ligase
MDUV_24130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MDUV_24130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBX17553
UniProt:
A0A7I7K0I0
LinkDB
All DBs
Position
complement(2526307..2528439)
Genome browser
AA seq
710 aa
AA seq
DB search
MSPEATPDPQAVLADQADDAPDAALRRRWQELADEVRDHQFRYYVRDAPIISDAEFDALL
GQLQALEDEHPELRTPDSPTQLVGGAGFATDFTPAEHLERMLSLDNVFTPDELAGWATRI
QGEIGADAHYLCELKIDGVALSLVYRDGRLERAATRGDGRTGEDVTLNARTIDDIPEKLS
EAADFPIPKVLEVRGEVFFRVADFEDLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTAR
RRLRMICHGVGRTEGAGGSPFDSLHDAYRALDAWGLPVSDHTVRVHGLDAVTERIAYWGE
HRHEVDHEIDGVVVKVDEVALQRRLGATSRAPRWAVAYKYPPEEATTKLLDIRVNVGRTG
RVTPFAYMEPVKVAGSTVGLATLHNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVVDLR
DGSEREFEMPTHCPECGTELAPAKEGDADIRCPNSRTCPAQLRERVFHVAGRGAFDIEGL
GYEAAIALLQAQVITDEGDLFTLTEDDLLRTDLFTTQKGELSANGRRLLTNLSAARSQPL
WRVLVALSIRHVGPTAARALATEFGSLDAIVEASEEQLAAVEGVGPTIAAAVTDWFTVDW
HRAIVDKWRAAGVRMADERDASIERTLEGLSIVVTGSLTGFSRDDAKEAIIARGGKAAGS
VSKKTAFVVAGDAPGSKYDKAVELGVPVLDEAGFVRLLDGGPDAVAPPAT
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcccgaggcgaccccggatccccaggcagtattggccgaccaggccgatgacgcc
cctgacgccgcgttgcgccggcgctggcaggaactcgccgacgaggtccgcgatcaccag
ttccgctactacgtgcgcgacgcaccaatcatctccgacgccgagttcgacgcactgctc
gggcagttgcaggcactcgaggacgagcatcccgagttgcggacaccggattcgccgacc
cagctggtcgggggagcgggattcgcgactgacttcacccccgccgagcacctcgagcga
atgttgagtctggacaacgtcttcactcccgacgagctcgcgggctgggccacccggatc
cagggtgagatcggcgccgacgcgcactatctgtgcgagctgaagatcgacggcgtggcg
ctgtcgctggtctaccgggacggccggctggaacgcgccgccacccgcggggacgggcgc
accggcgaggacgtcacgctcaatgcgcgcaccatcgatgacattcctgaaaagctcagc
gaggcagctgatttcccgattcccaaggtgctggaagtccgcggcgaggtgttcttccgg
gtggccgatttcgaggatctcaacgccgggctggtcgccgagggaaaaccgccgttcgcc
aacccgcgcaacagcgcggccgggtcgttgcgtcagaagaaccccgccgtgaccgcgcgc
cgccggctgcggatgatctgccacggggtcgggcgcacagaaggcgccggtggctcgccg
ttcgactccctgcacgacgcctaccgcgcgctcgatgcgtggggcctgccggtctccgac
cacaccgtgcgcgtgcacggcctcgacgcggtgaccgagcgcatcgcctactggggtgag
catcgccacgaggtcgaccatgagatcgacggcgtggtggtgaaagtcgacgaggtggcg
ctgcagcggcggttgggtgcgacgtcgcgggccccgcggtgggcggtggcctacaagtat
ccgccggaggaggcgaccaccaagctgctcgacatccgcgtcaacgtcggccgcaccggg
cgcgtgaccccgttcgcgtacatggagccggtgaaggtcgccggctccaccgtcgggctg
gcgacgctgcacaacgcctcggaggtcaaacgcaagggcgtgctgatcggcgacaccgtg
gtgatccgcaaggccggcgacgtcatccccgaggttctcggtccggtggtggacctgcgc
gacgggtcggagcgggaattcgagatgcccacccactgcccggaatgcggcaccgaactc
gcgccggccaaggagggtgacgccgacatccgctgccccaattcccgcacctgtcccgcg
cagttgcgtgagcgcgtcttccacgtcgccggccgcggcgcgttcgacatcgagggcctg
ggttacgaggccgcgatcgcgctgctgcaggcgcaggtcatcaccgacgagggggacctg
ttcaccctgaccgaggacgatctgttgcgcaccgacctgttcaccacgcagaagggtgag
ctctcggccaacggccgccggctgctgaccaacctgagcgcagcgagaagccaaccgctg
tggcgggtgctggtggcgctgtcgatacggcatgtcggacccaccgcggcgcgggcgctg
gctaccgagttcggcagcctcgacgcgatcgtcgaggcttccgaggaacaactggccgcc
gtcgagggcgtgggccccaccatcgcggcggcggtgaccgactggttcaccgtggactgg
caccgggcgatcgtcgacaagtggcgggcggccggcgtgcggatggccgacgaacgtgac
gccagcatcgaacgcactctggagggcctgtcgatagtcgtgaccggttcgttgaccgga
ttcagccgcgacgacgcgaaggaggcgatcatcgcgcgcggcggcaaggcggccggctcg
gtgtcgaagaagacggcgttcgtggtcgccggtgacgcgcccgggtccaagtacgacaag
gccgtcgaactcggcgtgccggtcctcgacgaagcggggttcgtgcgtctgctcgacggc
ggccccgacgcggtggcgccgcccgctacctga
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