Methylorubrum extorquens AM1: Mex_1p4416
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Entry
Mex_1p4416 CDS
T00921
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mea
Methylorubrum extorquens AM1
Pathway
mea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mex_1p4416 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mea03019
]
Mex_1p4416 (pnp)
03016 Transfer RNA biogenesis [BR:
mea03016
]
Mex_1p4416 (pnp)
Enzymes [BR:
mea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Mex_1p4416 (pnp)
Messenger RNA biogenesis [BR:
mea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Mex_1p4416 (pnp)
Transfer RNA biogenesis [BR:
mea03016
]
Prokaryotic type
tRNA degradation factors
Mex_1p4416 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
Motif
Other DBs
NCBI-ProteinID:
ACS42047
UniProt:
C5B317
LinkDB
All DBs
Position
complement(4512100..4514337)
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AA seq
745 aa
AA seq
DB search
MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT
VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH
DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEIAESTLDLVVA
GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTPPENAD
VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFSPEKVKAAFKE
AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG
EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH
EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK
ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS
SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV
AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDLTEKLKAERAERGEPEREER
SDRGDRGDRGPRRDRGERRRESSGE
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtacaacgtgaagagctgatctggggcgaccgcaagctcgtcctcgagacc
ggcaagaccgctcgccaggcggacggctccgtggtcgccacctacggcgagaccaccgtg
ctcgccaccgtggtcgcgggcaaggagcccaaggccggcatcgacttcctgccgctcacc
gtgaactaccaggagcgcgcctacgctgccggccgcatccccggcggctacttcaagcgc
gaaggccgtccctccgagaaggagacactggtctcccgcctgatcgaccgcccgatccgt
ccgctcttcgtcgagggctggcgcaacgacacccaggtcgtcgtcaccgtcctctcccac
gatctcgagaacgatcccgacatcgtcgcgatggtcgcggcctccgccgccctcaccctc
tcgggcgtgcccttcatgggcccgatcggtgcggctcgcgtcggctacctcaacggcggc
tacaagctgaacccgctggtgacggaaatcgccgaatcgaccctcgacctcgtcgtcgcc
ggcacccaggacgcggtgctgatggtcgagtccgaggccaaggagctctccgaggacgtg
atgctcggggccgtgatgttcggccacaagcacttccagccggtgatcgaggcgatcatc
cgcctggccgagaaggccgccaaggagccgcgcgacttcaccccgccggagaacgccgac
gtcgaggccgccgttctcgcggtcgccgagaccgagctacgcgaggcctacaagaagacg
gtcaagcaggagcgctacgccgccgtcgacgccgtgaaggcgaaggtcgtggccgcgctc
tgcccggccgagggcgagcagaagttcagccctgagaaggtcaaggcggccttcaaggaa
gcgcagtcgaaggtggtccgctggaacatcctcgacaccggaagccgcatcgacggccgt
gacgtgaagaccgtccgctcgatcgtctccgaggtcggcgtgctgccccgcgcccacggt
tcgtcgctgttcacccgcggcgagacccaggcgctggtcgtggccacgctcggcaccggc
gaggacgagcagttcatcgacgcgctggaggggacctacaaggagcgcttcctgctccac
tacaacttccctccctactccgtcggcgagaccggccgcatgggttcgcccggccgccgc
gagatcggccacggcaagctcgcctggcgcgcgatccggcccgttctgccgccggcccac
gagttcccgtacacgatccgcgtggtctccgagatcaccgagtcgaacggctcgtcctcg
atggcttcggtctgcggcggttcgctgtcgctgatggatgcgggcgtgcccctgcgccgc
ccggtcgccggcatcgccatgggcctcatcctcgaaggtgagcgcttcgccgtgctgtcc
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtggccggctcggag
gagggcatcacctccctccagatggacatcaagatcgccggcatcaccgaggagatcatg
aagatcgccctcgcccaggccaaggacggccgcgcccacatcctgggcgagatgtccaag
gccctgaccgcggcccgtccggagctcggcgaatacgcgccgcgcatcgagacgatgcag
atccccaccgacaagatccgtgacgtgatcggcaccggcggcaagatcatccgcgagatc
gtcgagaagaccggcgccaagatcaacatcgaggataccggcatcgtcaagatcgcctcc
tccgacggcaaggcgatcaaggcggcctataactggatccgctccatcgtcgccgagccc
gaggccggcacgatctacgacggcacgatcgtcaagatcatggagttcggcgccttcgtg
aacttcttcggcgccaaggacggcctcgtccacatctcggaactcgctgcccagcgcgtc
gccaaggtcggcgacgtcgtgaaggaaggccagaaggtcaaggtgaagttcctcggtgcc
gacgagcgcggcaagatccgcctctcgatgaaggtcgtcgatcaggagaccggcgaggac
ctcaccgagaagctgaaggccgagcgggctgagcgcggcgagccggagcgcgaggagcgc
agcgaccgcggtgatcgtggcgaccgcggcccccgccgcgaccgcggcgagcgccgccgg
gaatcgtcgggcgagtaa
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