Megasphaera stantonii: DKB62_03960
Help
Entry
DKB62_03960 CDS
T05599
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
meg
Megasphaera stantonii
Pathway
meg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DKB62_03960 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meg03021
]
DKB62_03960 (rpoB)
03400 DNA repair and recombination proteins [BR:
meg03400
]
DKB62_03960 (rpoB)
Enzymes [BR:
meg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DKB62_03960 (rpoB)
Transcription machinery [BR:
meg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DKB62_03960 (rpoB)
DNA repair and recombination proteins [BR:
meg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DKB62_03960 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
AXL20791
UniProt:
A0A346AY48
LinkDB
All DBs
Position
complement(820536..824255)
Genome browser
AA seq
1239 aa
AA seq
DB search
MFKPVQVGKRTRYTYAKINEVLKMPHLLDLQNKSYEWFLEKGLKDIFQDISPIEDASGNL
SLSFEDFKLGEPKYDIRECKERDTTYAAPLRVQIRLVNHETGEIKDQEVFMGDFPLITDT
GTFIINGAERVIVSQLVRSPGVYYGCERDPMGTMLYNSTVIPNRGAWIELETDVNGIVYA
RIDRNRKIPVTVLIRALGWSSNAEILDLFFDDKRLKDTFEKDTTENQDEALVEIYKKLRP
GEPPTVESARNLFEGLFFDSRRYDMARVGRYKAGKKLGWERRLFGLTLHEPIVHPETGEV
IVDAHTEIGAAEVNKIKESGVFAGEGLVEAFVEKIDGSVYKIICNNSNLPYDHRTITRED
IIANIDYLLNLMDGFGTVDDIDHLGNRRLRCVGELLQNQFRIGLTRMERVVRERMTIQDA
ESITPQVLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAEITHKRRLSALGPGGLSRERAG
FEVRDVHHSHYGRMCPVETPEGPNIGLISSLACFGKVNEFGFIEAPYRRVDKETHVVTND
VWYITADEEEQYIIAQANEPLTEDGHFVHSRVACRHGEDTREFPADRVDFMDVSPKEVVS
VGTSMIPFLENDDANRALMGANMQRQAVPLLRTQAPLVGTGMEYKAACDSGVCVLAKHDG
VVCRVTGDEIKVRTDSGSIDTYRLIKFVRSNQSTCINQRPLVYKNERVTEGQVLADGMAT
DGGELALGYNILVAYMPWEGYNYEDAVLLSEELPKNDLYTSIHIEEYECDARDTKLGSEE
ITREIPNVSEDSTKNLDENGIIMIGADVFPGDVLVGKVTPKGETELTPEERLLRAIFGDK
EREVRDTSLRVPHGESGKVVNVRIFSRENNDELPPGVNRLVRVYIAQKRKIHEGDKMAGR
HGNKGVVSRVMRQEDMPFLPDGTPVQIVLNPLGVPSRMNIGQILETHLGWAMHELGVQIK
KMNPNLEAKLREAGYDFDTYGMPQPDKAGIHIATPVFDGAQAEDVFESLRIAGLPEDGKS
VLYDGRTGEPMDRRVTVGYTYFLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRF
GEMEVWALEAYGAAYTLQEMLTVKSDDVVGRVKAYEKIVKGENIPEPGVPESFKVLLKEL
QAIGLDVQILNEDGEEVVIKELDDEDDVEPEQTDELRRVMEGEGMDSPSAPLADEAGDGE
PAEEPVANGDEDDIMSAMSLDAVAEAEHLNDDTINEDED
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaacctgtacaagtagggaaaagaactcgatacacgtatgctaagattaacgag
gtcttaaaaatgcctcatttgttggatttgcagaacaaatcttatgaatggttcttagaa
aaagggctgaaagatatttttcaagatatttcgcccatcgaagatgcatcgggcaacttg
tctttatcctttgaagatttcaaactgggggaacctaagtatgacatccgggaatgcaag
gaacgagacacgacatatgccgcgccgcttcgggttcagatccgtcttgtcaatcatgaa
acaggggaaattaaagaccaggaagtattcatgggggatttcccgctgattacagataca
ggtacatttattatcaatggggcagaacgcgttatcgtcagccagctcgtgcgctcgccg
ggcgtatattacggctgcgaacgcgatccgatgggcaccatgttgtataactctacggtc
attccgaaccgcggcgcctggattgaattggaaacggacgtgaacggtatcgtgtatgcc
cgtatagaccgcaaccgcaaaatccccgtcacggtgctgatccgcgccctgggctggtct
tccaatgcagaaatcctcgacttgttcttcgatgataagcggctcaaggatacctttgaa
aaagatacgacggaaaaccaggatgaagccctcgtagaaatctataaaaaactccgcccc
ggtgaaccgccgacagtagaaagcgcccgcaatttgttcgaagggctgtttttcgactcc
cgccggtacgatatggcccgcgtcggccgctataaagccggcaaaaagctgggctgggaa
cgccggttattcggcttgacgctccacgagccgatcgttcatcccgaaacgggtgaagtg
atcgtcgacgctcatacggaaatcggcgcagctgaagtaaacaaaattaaagaaagcggc
gtattcgccggcgaagggctcgtagaagccttcgtagaaaaaattgacgggtctgtatat
aagattatctgcaataacagcaatctgccgtacgatcaccgcacgattacccgcgaagat
attatcgccaacatagattacctgctgaacctcatggacggcttcggcaccgtcgacgac
atcgaccatttgggcaaccgccgcctccgctgcgtcggcgaactgctccagaaccagttc
cgcatcggcctgacccgtatggaacgcgtcgtccgcgaacgcatgacgattcaggacgcc
gaaagcattacgcctcaggtcctgatcaatatccgtcctgtcgttgcagcgattaaagaa
ttcttcggttccagccagttgtcccagttcatggaccagacgaacccgctggctgaaatc
acgcataaacgccgtctcagcgccttgggccccggcggcttgtcccgtgaacgggcaggg
tttgaagtccgcgacgttcatcactcccactacggccgcatgtgccctgtagaaacgcct
gaaggtccgaacatcggcctgatttcttcgctggcctgcttcggcaaggtaaatgaattc
ggctttattgaagcgccgtaccgccgcgtcgataaggaaacccatgtcgttacaaacgac
gtttggtatatcacggcagatgaagaagaacagtatatcatcgcccaggctaacgaaccg
ctgaccgaagacggtcattttgtacacagccgcgtcgcttgccgtcacggtgaagatacg
cgtgaattcccggccgaccgcgtcgatttcatggacgtatcgcctaaggaagttgtttcc
gtcggtacatccatgattccgttcctggaaaacgacgacgccaaccgcgcgctcatgggc
gcgaacatgcagcgtcaggccgtgccgctcctccgcacgcaggctccgctcgtcggtacg
ggcatggaatacaaggctgcctgtgactcgggcgtatgcgtactggctaagcacgacggc
gtcgtatgccgcgtaactggcgatgaaattaaagtaagaaccgattccggctctattgat
acataccgcttgattaaattcgtccgttccaaccagagcacctgcattaaccagcgtccc
ttggtatacaagaacgaacgcgttacggaaggccaggtattggccgacggcatggctacg
gacggcggcgaattggcattgggctacaacatcctcgtagcgtacatgccttgggaaggc
tataactacgaagacgccgttctcctcagcgaagaattgccgaagaacgacttatatacg
tctatccatattgaagaatacgaatgcgatgcccgcgatacgaagctgggctctgaagaa
attacccgcgaaattccgaacgtcagcgaagacagcacgaaaaacctcgacgaaaacggc
atcatcatgatcggcgccgacgtattccccggcgacgtcctcgtcggtaaggtcacgccg
aaaggcgaaacggagctgacgccggaagaacgcctcctgcgcgctattttcggcgacaag
gaacgggaagtccgcgatacgtcgctgcgcgtgcctcacggcgaatcgggcaaggtcgtc
aacgtccgcattttctcccgcgaaaacaatgatgaactgccgccgggcgtcaaccgcctc
gtccgcgtatacattgcacagaagcgcaagattcacgaaggcgacaagatggctggccgt
cacggaaacaagggtgtcgtatcccgcgtaatgcgccaggaagacatgccgttccttccc
gacggcacgcctgttcagatcgtgctgaatcccttgggcgtaccgtctcgtatgaacatc
ggtcagattttggaaacccaccttggctgggctatgcacgaactgggcgttcagatcaaa
aagatgaacccgaatttggaagcgaagctgcgcgaagccggttacgatttcgatacgtac
ggcatgccgcagcccgataaggccggcattcacattgcgacgccggtatttgacggcgcg
caggctgaagacgtattcgaatccctgcgcatcgccgggttgccggaagacggcaaatcc
gtcctgtacgacggccgtacgggcgaaccgatggaccgccgcgtaaccgtcggttacacg
tacttcctcaagctgcatcatctggtcgacgataagatccacgctcgttcgactggcccg
tactccctggttacgcagcagcctctgggcggtaaagctcagttcggcggccagcgtttc
ggcgaaatggaagtttgggctttggaagcatacggcgcggcatacacgctgcaggaaatg
ctgacagtcaagtctgacgatgtcgtcggccgtgtcaaagcgtatgaaaaaattgttaaa
ggcgaaaatattcctgaaccgggcgttcctgaatccttcaaggtattgcttaaagaattg
caggctatcggcttagatgtccagattctcaatgaagacggcgaagaagttgtcatcaag
gaactggatgacgaagacgatgtagaaccggaacagacagatgaactccgccgcgttatg
gaaggcgaaggcatggacagcccgtcggcgcccctggctgatgaagccggagacggcgaa
ccggcagaagaaccggttgccaacggcgatgaagatgatattatgagcgccatgagcctc
gacgccgttgccgaagcggaacatctgaacgacgatactattaacgaagatgaagactaa
DBGET
integrated database retrieval system
