KEGG   Melaminivora sp. SC2-7: C7H73_09480Help
Entry
C7H73_09480       CDS       T05362                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
melm  Melaminivora sp. SC2-7
Pathway
melm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:melm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C7H73_09480 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:melm03400]
    C7H73_09480 (ligD)
Enzymes [BR:melm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C7H73_09480 (ligD)
DNA repair and recombination proteins [BR:melm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C7H73_09480 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AVP57866
UniProt: A0A2P1NLK2
LinkDB All DBs
Position
complement(2066785..2069307)
Genome map
AA seq 840 aa AA seqDB search
MARRKDDPLSSYRQKRDFTVTPEPQEGGAPSHGALRFVVQKHWATRLHYDFRLELDGTMK
SWAVPKGPSYDPADKRMAVPVEDHPISYNTFEGDIPQGQYGGGHVIVWDKGWWEPLEDPE
QGLRSGKLKFVLHGHKLHGRWTLVRMGGGRGKPAWLLIKERDGLERAATDYSVVDALPDS
VGPLPEAPGRPATAPSKPAQSPAAKPSALPDFIAPQLATLVDEPPAPRADWLYELKFDGY
RILARIDGQDIRLLTRAGKDWTQRMPHLVQALARLGLGSAWLDGEIVVPDSQGVPDFQAL
QNAFDATGAADVVYYAFDLPFLDGRDLRNLPLVQRRAALQQALAQADERHVRLSAPFDAP
AAELLASSCALGFEGVIGKRRDAPYVSARSQDWIKLKCSQRQEFVIAGYTDPKGTRTGLG
SLLLGVHDEKSGALRYAGNVGTGFTRQSLQALSARLRALKTDESPFAQRSHIAGSPHWVR
PELMAEVAFAGWTRDARVRHAVFHGLREDKPAAAIVRERSAPLVPPRQRAAPAASGKPAP
AGDDEAQVGTLRITHPDRVIDPTTGATKLDLVRYYARVGPLMMEHLAQRPVSVVRTPGGV
QGVRVFQRHFDTGDLPGLRALDPALYEGHPPLFEVASAEGLAQAAQMSVVELHTWNARRD
RIDRPDRMVFDLDPGEDVAWQQVLEGAELVRVLLQELGLPAFLKTSGGKGLHVVTPIKRL
YDWDTVRAFSQAVVQHLARTLPQRFVAQAGPRNRVGRIFVDWLRNSFGATTVSAWSVRAR
PGLGISVPLRWNELHGLESSAHWHLGNIDARLDEGNAPWRGYAKATVSLTPAMRTLKDGR
NT seq 2523 nt NT seq  +upstreamnt  +downstreamnt
atggcccggcgtaaggacgacccactgtctagctatcggcaaaagcgcgacttcaccgtc
acgcccgagccgcaggagggcggtgcgcccagccatggcgccctgcgcttcgtcgtgcaa
aagcactgggcaacgcggctgcactacgacttccggctggagttggacggcaccatgaag
agctgggccgtgcccaagggccccagctacgacccggcagacaagcgcatggcggtgccg
gtcgaagaccacccgatttcctacaacacgttcgagggcgacatcccccaggggcaatac
ggcggcggccacgtcattgtctgggacaagggctggtgggagcctttggaagatcccgag
caaggactgcgcagcggcaaactcaagttcgtcctgcacggccacaagctgcacggacgc
tggactctggtgcgcatgggcggcgggcgcggcaagcccgcctggctgctgatcaaggag
cgcgacggcttggaacgggccgcgacggattacagcgtggtggatgccctgccagacagc
gttggtccgctgccagaagcgcctgggcggcccgcaacggccccttccaagcccgctcaa
tccccagcggcgaagccgtctgccctgcccgacttcatcgccccgcagctggccacgctg
gtggacgaaccccctgccccgcgcgccgactggctgtacgagctgaaattcgacggctac
cgcatcctggcgcgcatcgacggccaggacatccgcctgctcacgcgcgccggcaaggac
tggacgcagcgcatgccgcacctcgtgcaggcccttgcccgcctgggactggggtcggcc
tggctcgacggtgagatcgtggtgccggacagccagggcgtgccggacttccaggcgctg
caaaacgccttcgatgccacgggcgccgccgacgtcgtgtactacgcgttcgacctgccg
ttcctggacggccgcgatttgcgcaacctgccgctggtgcagcgccgtgcggccctgcag
caggcgctggcgcaggcagacgagcgccacgtgcgcctcagcgcacccttcgacgcgccg
gcagcagagctccttgcctcgtcctgcgccctgggatttgaaggcgtgatcggcaaacgc
cgtgatgcaccctatgtttctgcccggtcgcaggactggatcaagctcaaatgcagccag
cgccaggaattcgtcattgccggctataccgacccgaaaggcacgcgcaccggcctgggc
tcgctgctgctgggtgtgcacgacgagaaaagcggtgcgctgcgctacgccggcaatgtg
ggcacggggttcacccgccagtccctgcaggcgctgtctgcccggctgcgagcgctgaaa
acggacgagtcgccctttgcgcagcgcagccacatcgccggcagcccgcactgggtgcgg
cccgagctgatggccgaggtggcctttgctggctggacacgcgacgctcgcgtgcgccac
gccgtgtttcacggactgcgcgaggacaagccggctgccgccatcgtacgcgagcgctct
gccccgctggtgccgccgcgccagcgcgccgcgccggccgccagcggcaagcctgcgccg
gcgggcgacgacgaggcgcaggtgggcacgttgcgcattacccatcccgaccgcgtcatc
gacccgaccactggcgccaccaagctcgacctggtgcgctactacgcgcgggtggggcct
ttgatgatggagcacctggcacaacgcccggtttcggtggtgcgcacgccgggcggcgtg
caaggcgttcgggtcttccagcgtcacttcgacaccggcgacctgcccggcctgcgcgcg
ctggaccctgcgctctatgaaggccatccgcccttgttcgaggtggcaagcgccgaagga
ctcgcgcaggcggcgcaaatgagcgtggtggagctgcacacctggaacgcccgccgcgac
cgcatcgaccggcctgaccgcatggtcttcgatctggaccctggggaagatgtggcctgg
cagcaggtgctggagggtgccgagctggtgcgtgtgctgctgcaagagctgggcctgcca
gctttcctgaaaaccagcgggggcaagggcctgcacgtggtcacgcccatcaagcggctg
tacgactgggacaccgtgcgcgcgttctcgcaggctgtcgtgcagcacctggcgcgtacg
ctgccgcaacgcttcgtggcccaggccgggccacgcaaccgcgtgggccgcatcttcgtg
gactggctgcgcaacagctttggcgccaccacggtcagcgcctggtcggtacgggcgcgg
cccggcctgggcatctcggtgccgctgcgctggaacgagctgcacggcctggagagcagc
gcgcactggcatctgggcaacatcgacgcgcgcctggacgaaggcaacgcaccctggcgc
ggctacgcgaaggccactgtctccctcacgccggcgatgcggacgctgaaggacgggcgc
tga

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