KEGG   Methanoculleus marisnigri: Memar_1865Help
Entry
Memar_1865        CDS       T00477                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mem  Methanoculleus marisnigri
Pathway
mem03030  DNA replication
mem03410  Base excision repair
mem03420  Nucleotide excision repair
mem03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Memar_1865
   03410 Base excision repair
    Memar_1865
   03420 Nucleotide excision repair
    Memar_1865
   03430 Mismatch repair
    Memar_1865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mem03032]
    Memar_1865
   03400 DNA repair and recombination proteins [BR:mem03400]
    Memar_1865
Enzymes [BR:mem01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Memar_1865
    6.5.1.6  DNA ligase (ATP or NAD+)
     Memar_1865
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Memar_1865
DNA replication proteins [BR:mem03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Memar_1865
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Memar_1865
DNA repair and recombination proteins [BR:mem03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Memar_1865
   NER (nucleotide excision repair)
    Other NER factors
     Memar_1865
   MMR (mismatch exicision repair)
    Other MMR factors
     Memar_1865
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ABN57791
UniProt: A3CWP1
LinkDB All DBs
Position
complement(1858721..1860367)
Genome map
AA seq 548 aa AA seqDB search
MQFLEFAQVCEHLEGTPGRLDMIEQVAAVLPRLDDEELPVFVRFVMGRVFPDWSTKKLGV
GPNLLYDAVAYVVGTKRETVREAINTTGDVGLAVEGLLARKEQTSFFIQELDLLDVYREL
ERMAAAEGQRSQREKLRVAQGLFGNARPLEGRYLARLLLEELRIGMGEGNVRDAVAKAFE
LDVRLVEHAHQALNDLGEVALLARRDPDALSGVTIEPFRPVKMMLAQAGTIAAQIEDHGE
VAVEYKYDGSRFQFHKVGDVCRIYSRRLEDVTESLPDIANLLLEATDHDVILDGEAVAVR
DGKPMPFQYVIRRFRRKHEVDSMMEKIELVPMVFDILYLDGETLMDRPLAERRKALDEVL
GAHVAPQFPATDAAAAEAIYAEALDLGHEGVMVKVLDSPYTPGVRGRLWVKVKPGVETLD
LVVVGAEWGEGRRAGTFGSFLLAVQDQGRLLPVGKVATGITDEVLAELYALFKDRVIARS
GKEVTLEPEVVFEVGYSEIQTSPNYESGYALRFPRFVRVREDKSVDETETLDSLAERYGR
QRNGQGSL
NT seq 1647 nt NT seq  +upstreamnt  +downstreamnt
atgcagtttctggagttcgctcaagtctgcgagcaccttgaagggacccccgggcgcctc
gatatgatcgagcaggtcgccgccgtcctcccccggctcgatgacgaggagcttcccgtc
ttcgtccggttcgtcatgggcagggtctttcccgactggagcaccaaaaaactcggcgtg
ggcccgaaccttctctacgacgccgtggcctacgtcgtcgggacgaagcgggagaccgtc
cgcgaggcgatcaacacgaccggggacgtgggtctcgccgtcgaggggctccttgcacgg
aaggagcagacatcgttcttcatccaggaactcgacctcctcgacgtctaccgggaactc
gagcggatggcggccgccgaaggacagcggtcgcagcgggagaaactccgcgtggcgcag
ggcctcttcgggaacgcccggccgctcgaggggcgatacctcgcgcggctgctgctcgag
gagctccggatcgggatgggggaagggaacgtccgcgacgccgtcgcgaaggcgttcgag
cttgacgtccgcctggtcgagcatgcccaccaggcgctgaacgatctcggggaggtcgcc
ctccttgcccggcgcgaccccgacgcgctctccggtgtgacgatcgagccgttccggccg
gtgaagatgatgctcgcgcaggcgggaaccatcgccgcccagattgaggatcacggcgag
gtggcggtcgagtacaagtacgacgggagccggttccagttccacaaggtgggcgatgtc
tgccggatctactcgcggagactggaggacgtcacggagagcctccccgacatcgcgaac
ctcctcctggaggcgaccgaccacgacgtcattctggacggggaagcggtcgccgtccgc
gacgggaagcccatgccgttccagtacgtgatccggcggttccggcgcaagcacgaggtg
gactcgatgatggagaagatcgagctcgtgccgatggtcttcgatatcctctacctggac
ggcgagacgctgatggatcgccccctcgcggagcggcggaaagccctcgacgaagtgctc
ggcgcacacgtcgctccgcagttcccggccaccgacgcggccgcggcggaggcgatctac
gccgaagccctcgacctcgggcacgagggcgtgatggtgaaggttctcgactcgccctac
actcccggcgtccggggccgcctctgggtgaaggtcaaacccggcgtcgagacgctcgac
ctcgtggtcgtgggggcggagtggggcgagggccggagggccgggacgttcggctcgttc
ctgctcgcggtgcaggaccagggccggctcctcccggtcgggaaggttgcgaccgggatc
acggacgaagtcctcgcggagctctatgccctcttcaaggaccgggtgatcgcccgctct
ggaaaggaggtgacgctcgagccggaggtggtcttcgaggtgggctactccgagatccag
acgagcccgaactacgagagcggttacgcgctccggttcccgcggttcgtccgggtgcgc
gaggacaagagcgtcgacgagaccgagaccctcgactccctcgcggaacgctacgggcgg
cagaggaacgggcagggatcactatag

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