Methanoculleus bourgensis MAB1: MMAB1_3218
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Entry
MMAB1_3218 CDS
T04314
Symbol
rnb
Name
(GenBank) Exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mema
Methanoculleus bourgensis MAB1
Pathway
mema03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mema00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMAB1_3218 (rnb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mema03019
]
MMAB1_3218 (rnb)
03016 Transfer RNA biogenesis [BR:
mema03016
]
MMAB1_3218 (rnb)
Enzymes [BR:
mema01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MMAB1_3218 (rnb)
Messenger RNA biogenesis [BR:
mema03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MMAB1_3218 (rnb)
Transfer RNA biogenesis [BR:
mema03016
]
Prokaryotic type
tRNA degradation factors
MMAB1_3218 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
CVK34431
UniProt:
A0A110BIH5
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All DBs
Position
chrI:complement(2639215..2640684)
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AA seq
489 aa
AA seq
DB search
MQNYPHVDLNAIAWAAMDHYGFIPAFPPPVVREVGALAAKVIRDAPGDPRDLRSLLWSSI
DNHDSRDLDQIEVCEEGSNGEILVRVAIADVDLCVPKGSETDRHACHNGTSVYTGVETFP
MLPDRLSAGLTSLLPGEDHMAIVIEYTVLLDGSTRPGDIYRAIVRNQAKLVYEEVGDWLE
GTGPVPRTVRETSGLAEQVLLQDEAAMRMKKRRTEQGALALETIEAEPVMTDGRVGGLVI
QQQNRARCLIEEFMVAANGTMTAFLSDAGLPMIHRVVRTPKNWDGIAREAAERGEALPAE
PDAEALTQFLIRQKAADPDRFPDLSLTVVKLMGAGEYVAFRPGDEPVGHFALAVTDYTHG
TAPNRRYVDLIIQRLIKSVIDGERYPPYAPSELDDLALRMTDREKASQKVERFVRKAAAA
VLLRDRIGDSFEAFVTGASEKGTYVRLIDPPAEGKVVRGEQGLRVGQRVRVRLMATDPYR
GFIDFEHTG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgcagaactatccccatgtcgacctgaacgccatcgcatgggcggcgatggatcactac
ggcttcatcccggcattcccgccgcccgtcgttcgggaagtcggcgctcttgccgcgaaa
gtcatccgggacgccccaggcgacccccgcgacctccggtcgctcctctggtcatcgatc
gataaccacgattcacgggacctcgatcagatcgaagtctgtgaagaagggtcgaacgga
gagatcctggtcagggttgcgatcgccgacgtcgacctctgcgttcctaagggatcagag
acagaccggcacgcctgccataacggaacctcggtctacaccggtgtcgagacctttccg
atgctccccgaccgcctttctgcgggcctcacctcgctcctccccggagaggaccacatg
gcgatcgtcatcgagtacaccgtcctcctggacgggagcaccaggcccggcgatatctac
cgggcgatcgtcaggaaccaggcaaaactcgtctacgaggaggtcggcgactggctggaa
ggaaccggccctgtcccacggacggtcagggagacgtccggcctcgcggagcaggtcctc
cttcaggacgaggctgccatgcgcatgaagaagcgccggaccgagcagggagcgctcgcc
ctcgagaccatcgaagcagagccggtcatgacggacggacgggtcggcggtctcgtcatc
cagcagcagaaccgtgcgcgatgcctgatcgaggagttcatggtcgcagcgaacggcact
atgacggcgttcttgagcgacgccggtctccccatgatccaccgggtcgtccgcacacca
aagaactgggatgggatcgcgagggaggcggcggaacgcggcgaggccctgcctgccgag
ccggacgcggaggcacttacacagttcctcatccggcagaaggcggccgacccagaccgc
ttccccgacctctccctgaccgtggtgaaactcatgggagcgggtgagtacgtagcgttc
cggccgggtgacgagccggtcggccacttcgccctcgccgtcaccgactacacccacggc
accgccccgaaccggcgctacgtcgacctcatcatccagcgattgattaaatcggtcatc
gacggagagcgctaccctccctatgccccctccgaactcgatgacctcgccctccggatg
accgaccgggagaaggcgtcccagaaggtcgagcgattcgtcaggaaggctgcggccgcg
gtcctgctccgggacaggataggcgactcgtttgaggcgtttgtcaccggtgcctcagag
aaggggacgtacgtcaggctgatcgacccgccggccgaaggaaaggtcgtgcggggcgag
cagggactgcgggtcggccagagggtgcgtgtccggctgatggcgacggatccctacagg
ggcttcatcgactttgagcataccggatga
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