Methylovorus sp. MP688: MPQ_1339
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Entry
MPQ_1339 CDS
T01361
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mep
Methylovorus sp. MP688
Pathway
mep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MPQ_1339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mep03019
]
MPQ_1339
03009 Ribosome biogenesis [BR:
mep03009
]
MPQ_1339
Enzymes [BR:
mep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MPQ_1339
Messenger RNA biogenesis [BR:
mep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MPQ_1339
Ribosome biogenesis [BR:
mep03009
]
Prokaryotic type
rRNA processing factors
MPQ_1339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADQ84500
LinkDB
All DBs
Position
complement(1366470..1369211)
Genome browser
AA seq
913 aa
AA seq
DB search
MKRMLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNY
GTDRHGFLPFKEVARSYFQNDSDGRARIQDVLKEGQELIVQVDKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEDRNELRDLMAQLEVPNGMSIIARTAGIGRNIEELQW
DLNYLLQLWTAIEGASTMQSGPFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQ
FMNHVMPGNVSRVKLYRDEIPLFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVD
VNSGRSTKGSDIEHTAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRL
RDALHHDRARVQTGKISRFGLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIESTALHI
LRITQEEAMKENSAIIQVQLPVEAATFLLNEKRAEIHKIEQRSGVQVVLIPNIHMETPNY
NISRIRSDDVNEETSRASYQMVELPTEGEYNPAAQQEVKAVRAEAAVKGITPASPAPIAT
EKAVEVPAAPSLFGRFKNWLSKITETKEEVVAPETTKQRSDNNRNNRNQPRNARNNRNGR
NGERSERPAAERNAERGSERNNERAERGERPANERSERQERGNRQEPRQQEGREPRQQNQ
PRAERGEPREKPAIASPAPAATQQATNGEAGNEPRSRRGRNGRRERPAREPRENQARKAA
DDAAIGAPVAEDVAQQVAAPVAAAVETVAQNNTVSEAPAVVETVAAAPAVETSPAVEPVA
KVVEPQQADLALVSDTPAPVVAAEPVAAVAEAAPAAEPVAEPVVVAEKPEATDKPEKKPR
APRRRKAEAETKPLDLAASGLQLVETKADAPVAAASVEAEPAAPRSRKPAAWQQKATSDE
SAEAPLVLIETQK
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacacagtcggaagaactacgtgtcgccatcgtcgat
ggtcaaaaactgatcgacctcgacatcgaatccgctggcaaggaacaacgcaagagcaat
atctacaagggtatcatcacccgcatcgagccttctcttgaggctgcatttgtcaattac
ggtactgaccgtcacggttttctccccttcaaggaagtcgctcgcagctatttccagaac
gacagcgatggccgcgcccgcattcaggatgttctgaaggaaggccaggagcttatcgtc
caggttgacaaggacgaacgtggcaacaagggcgcagccctcaccacctttatttccctg
gcgggccgttatctggtgctgatgccgaacaaccctcgtggtggtggtgtatcgcgccgc
atcgaaggcgaagaccgcaatgaactgcgtgatctgatggcccagctggaagtacctaac
ggcatgagcatcattgcccgtaccgcaggtattggccgcaatatcgaagagctgcaatgg
gacctgaactacctcttgcaactgtggacagccattgagggtgcctccaccatgcaaagc
ggccctttcctgatctatcaggaaggcagcctggtcattcgtgccatccgcgattacttc
cagccagacattggcgaaatcctgatcgacaccgccgacattcacgagcaagccgtgcag
ttcatgaaccacgtcatgccgggcaatgtatcgcgtgtgaagctgtatcgcgacgagatt
cctttgttctcccgcttccagatcgagcaccagattgagaccgcgttttcacgcgaagtg
cgcctgccttccggcggcgccatcgtgattgaccacacggaagccctggtatccgtcgac
gttaactccggccgctccaccaaaggcagcgacattgagcacaccgcgttcaataccaac
ctggaagctgccgatgaagtagctcgccagctccgtctgcgcgacctgggtggtctggtg
gtgatcgatttcatcgacatggaaaaccagcgcaatcagcgcgaagttgaaaaccgcctg
cgcgatgccctgcatcatgaccgtgcccgcgtacaaaccggcaagatttcccgcttcggc
ctgctggagctgtcacgccagcgcctgcgtccaagcctgggcgagtccaaccatatccca
tgtcctcgttgccatggtacaggccatatccgcggcatcgagtccactgcgctgcatatc
ctgcgaatcacgcaggaagaagccatgaaggaaaacagtgccattattcaggtgcagctg
ccggtggaagcagcaaccttcctgttgaatgaaaagcgtgccgagatacacaagatcgag
caacgctccggtgtacaggttgtgctgatccccaacattcacatggaaaccccgaactac
aacatctcgcgtattcgcagtgatgatgtcaacgaggaaaccagccgcgccagctaccag
atggtagagctgccaaccgagggtgaatacaacccggctgcgcaacaggaagtcaaagcc
gtgcgcgccgaggctgccgtcaagggcattaccccagcatctccagcgccgattgccacg
gaaaaagcagttgaagtgcctgccgcgccttccctgtttggacgtttcaagaactggctc
agcaagatcaccgaaaccaaggaagaagttgttgcgccggaaaccaccaagcagcgcagc
gacaacaaccgtaacaatcgcaatcagccacgcaatgcgcgtaacaaccgcaatggccgc
aatggtgagcgcagtgaacgtccagccgcggaacgcaatgcggagcgtggtagcgaacgc
aacaacgagcgcgcagaacgcggtgagcgcccagccaatgagcgtagcgaacgccaggaa
cgtggcaaccgtcaggagccacgtcagcaggaaggccgtgaaccacgccagcaaaaccaa
ccgcgtgcagagcgtggtgagccacgtgaaaaaccggccatcgcatctccagcgcctgca
gcaacccaacaagccaccaatggcgaagctggcaatgagcctcgtagccgtcgcggccgt
aatggtcgccgtgagcgcccagcacgcgagccacgtgaaaaccaggcacgcaaggcagcc
gatgatgccgctattggtgccccggtagcagaggatgtggctcaacaagtcgcagcacct
gtcgcggccgcagttgaaaccgttgctcaaaacaacaccgtgagcgaagcgcctgctgtc
gtagaaacagttgcagcggcacctgccgttgagaccagccccgcagtcgagcctgttgcc
aaggtagtggaaccacaacaagcggatctggcactggtcagtgataccccagctccggta
gtggcagcagaacctgttgccgcagtggctgaagcagcaccagctgcagagcctgtagcc
gaacctgttgtagtggcagaaaaaccagaagctactgacaagcccgagaagaaacctcgc
gcaccacgccgccgcaaggctgaggcagaaaccaagcctctggatctcgcagcaagtggc
ttgcaactggtggaaaccaaagccgatgcgccggtagcagctgcgtcagtggaagcagaa
cctgcagccccacgcagccgtaaaccagcggcatggcagcaaaaagccaccagcgatgaa
agtgctgaagcgccactggtattgatcgaaacacagaagtaa
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