KEGG   Methanosarcina sp. WWM596: MSWHS_1883Help
Entry
MSWHS_1883        CDS       T03852                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
meq  Methanosarcina sp. WWM596
Pathway
meq03030  DNA replication
meq03410  Base excision repair
meq03420  Nucleotide excision repair
meq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:meq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSWHS_1883
   03410 Base excision repair
    MSWHS_1883
   03420 Nucleotide excision repair
    MSWHS_1883
   03430 Mismatch repair
    MSWHS_1883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:meq03032]
    MSWHS_1883
   03400 DNA repair and recombination proteins [BR:meq03400]
    MSWHS_1883
Enzymes [BR:meq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSWHS_1883
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSWHS_1883
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSWHS_1883
DNA replication proteins [BR:meq03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MSWHS_1883
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MSWHS_1883
DNA repair and recombination proteins [BR:meq03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSWHS_1883
   NER (nucleotide excision repair)
    Other NER factors
     MSWHS_1883
   MMR (mismatch exicision repair)
    Other MMR factors
     MSWHS_1883
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AKB18746
UniProt: A0A0E3L2W8
LinkDB All DBs
Position
complement(2326085..2327791)
Genome map
AA seq 568 aa AA seqDB search
MTSFREFAETCQAIEKISSTIETTNKVADLLKKVDVEELPLATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMSIQSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFLEEQPELS
ITEVYQRFKTASEASGKGSQEVKVRNLQFLFTSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPAEVVEHSFMVTNDLGIVAAAAKKGGIESLKSLGIEINRPIKMMLSQISPD
IDADIRDMKEAAIEWKFDGARVQIHKSGNSVTLFSRKLENVTNSLPDLVEIVRKHVKAES
AILDGEAVAVDENGRPKAFQEILKRFRRKYDVEEKMLGIPIQLNLFDIMYLNGKTLIDFP
LVERRKALESCVESSVENSKSICVDEQVITGDLEVVEKIYREALRAGHEGVMVKNPNSLY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGFGRRANLIGSYSVACYDPETSRFMQVGKVGT
GLTDEQLKELTEMLSGLMEGGETGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIRRVYSQQLKRL
NT seq 1707 nt NT seq  +upstreamnt  +downstreamnt
atgacaagcttcagggaatttgcagaaacctgccaggcgattgaaaagatatcgagcact
atagaaactacaaataaggttgctgaccttctcaaaaaggttgatgtcgaagagcttcct
cttgcaactcactttatcatgagtgaggtttttcctgcctggagtggagagcagctcggg
attgggacaagtttgctttatgtttccctttccaaagcctcaggcatgtctatacaaagt
atagaatctcttatacggaccactggagacatcggggatacagcactccttattttaaag
gaaaaaagaaaaaatcaggtgacattttcttctttcctcgaagagcagccagagctttca
ataactgaggtttaccagcgtttcaagacggcttcagaagcttcgggaaaaggatcacag
gaagttaaggtcagaaaccttcagtttctatttacttcatcaaccccgagggaggcaaaa
tacatttccaggcttgctcttgaagaactccgcataggcgtaggagagggagttgtcagg
gatgccattgctaaagctttttccgtccctgcagaggtggtggaacattccttcatggtt
acaaatgatctcgggatagtggcggcagctgccaagaaaggcgggatagaatccctcaag
agtctcgggatagaaattaaccgccccataaaaatgatgctttcgcagatcagccctgat
atagatgccgatatcagggatatgaaagaagctgcaattgagtggaaattcgacggggca
agagtccagatccacaagagcggaaattctgtcactcttttttcacgcaagcttgaaaac
gtcacaaattccctccctgaccttgtcgaaatagtccggaaacatgtaaaggctgagtcc
gcaatccttgacggagaagccgttgcagtagacgaaaatggaaggccaaaagcctttcag
gagatccttaagcgtttccggcgcaagtacgatgttgaagaaaaaatgctcggaattcct
atccagctcaacctctttgacatcatgtacctgaacggcaaaaccctgattgattttcct
cttgttgagcggcgaaaagcgcttgagtcctgtgtggagagctcagttgagaactcaaaa
tccatttgcgtggacgagcaggtgataaccggagacctcgaggttgtggagaagatctac
agggaagccttaagagccgggcacgaaggcgtcatggtcaaaaatcctaactcgttatat
tcccccggcaagcggggtaaaaactggctgaagaaaaaaccccttatggaaacccttgac
cttgtggtcgtgggggcagaatggggttttgggcgcagggcaaacctgataggctcgtat
tcagttgcctgctatgaccccgaaacctctcgcttcatgcaggtcggcaaggttggtaca
gggcttactgatgagcagttaaaagaactcacagagatgctctccgggttaatggaagga
ggggaaaccggaggagtatttgccataagaccgaaagttgttctggaaattgcctttgag
gaaatccagaaaagccccaactacgactcaggctttgcactgcgttttccccgcttcatc
cgcatccgggacgataaagaccccgaagaagcagatacaatccagcgaatcaggcgcgtc
tacagccagcagctgaaaaggctttaa

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