KEGG   Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1: MMINT_05290Help
Entry
MMINT_05290       CDS       T02692                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mer  Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1
Pathway
mer03030  DNA replication
mer03410  Base excision repair
mer03420  Nucleotide excision repair
mer03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mer00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MMINT_05290
   03410 Base excision repair
    MMINT_05290
   03420 Nucleotide excision repair
    MMINT_05290
   03430 Mismatch repair
    MMINT_05290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mer03032]
    MMINT_05290
   03400 DNA repair and recombination proteins [BR:mer03400]
    MMINT_05290
Enzymes [BR:mer01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MMINT_05290
    6.5.1.6  DNA ligase (ATP or NAD+)
     MMINT_05290
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MMINT_05290
DNA replication proteins [BR:mer03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MMINT_05290
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MMINT_05290
DNA repair and recombination proteins [BR:mer03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MMINT_05290
   NER (nucleotide excision repair)
    Other NER factors
     MMINT_05290
   MMR (mismatch exicision repair)
    Other MMR factors
     MMINT_05290
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C LRV
Motif
Other DBs
NCBI-ProteinID: AGN25909
UniProt: R9T5Q4
LinkDB All DBs
Position
518583..520340
Genome map
AA seq 585 aa AA seqDB search
MQYGDLVKVYEAIESTASRLEMADILANLFRSSDCKNIRTIVYMTQGNIVPDFYPEKLGM
ADKLYLRALSMATGQKGSRIKELWDKEGDTGKVTELVFANKSQTTLFSQDLTLERVHTAL
LKICRADGDGSQDLKMKLLADILHDAKPNEAKYIARLATGRMRIGIAAQTVIDALAIAFA
TKADKPDIERAFNITSDLGLVGETLCQNGIDGVRGMKVHVGNPIRAMLAERLSSPEELLE
RLDGKAMFEYKYDGLRIQAHISDSGIKLYSRRLEDMTEQFPDVAKALREAFTGVDAIVEG
ECVPIDINTGEFLPFQEVSHRRGRKHDLSEAIEDYPVRFHLFDCLYFDGEDLTLKPLPQR
RETLSKCVKITPSVKLSEAKVLDDPEKVQTFFMQALADGCEGLMAKSIANDSIYRAGARG
YLWIKYKKEYRSEMNDTVDLVAVGAFYGRGKRGGTYGALLMATYNPDSDSFETVCKLGSG
FSDVDLATIPEKLNKTKLDSKFTRVNSKLEADVWFEPYLVLEVRGAEITLSPIHTCERGA
IRDDAGFAIRFPRYTGTTRIDKKARDATTSAEITDMYRKQLKQSN
NT seq 1758 nt NT seq  +upstreamnt  +downstreamnt
atgcagtatggggacctcgtaaaggtctatgaagcgatagaatctacggcatcccgctta
gaaatggcagacatccttgccaatctattcagatcctcagattgtaagaatattcgtacc
attgtctacatgactcagggcaatatagttcccgacttctatcctgaaaaacttggcatg
gctgataaattatatttaagagctttatccatggccacagggcagaaaggatctaggata
aaagagctgtgggataaagaaggcgacactggaaaagttacagaattagtttttgctaat
aaaagtcagaccacacttttttctcaggatttgacattggaaagagttcatacggctctt
ctgaaaatctgtagagctgacggagatggatctcaggatctcaaaatgaagctactggca
gatatactgcatgatgccaaacccaatgaagcgaagtatattgcaagacttgccactggc
aggatgagaattggaattgcagcacagactgtgattgatgctctggcgattgcatttgct
actaaagctgataaaccagatatcgagagggctttcaacattacttctgatttaggtctg
gttggtgaaactttatgccaaaacggaatagatggcgtcagaggtatgaaagtacatgtg
ggcaaccctatccgcgctatgcttgctgaaagattatcttctccagaggagctcttggaa
cgtctagatggcaaagctatgtttgaatacaaatatgatggtctcaggattcaagcgcac
atttcagacagcgggattaagctttactcacggcgtcttgaagatatgactgagcaattc
ccggatgtagcgaaagcactcagggaagcctttactggtgttgatgccatagtggaagga
gaatgtgttccaatcgatataaacactggagaatttcttccatttcaggaagtatcccac
aggcgtggaagaaaacatgatctaagtgaagcaattgaggattatccagtaaggtttcat
ctttttgattgcttgtactttgatggagaggatcttactctgaaaccgcttccccaacgc
agagaaactttatcaaaatgcgtaaaaattacaccgtctgtaaaactttcagaagctaaa
gttctagacgatcctgaaaaagtacagacatttttcatgcaggctcttgctgatggctgc
gagggtctcatggctaaatcaattgcgaatgattcgatatatcgagcaggtgctagaggc
tatctctggataaaatataagaaagaatacagatcagaaatgaacgatactgtcgatctg
gtggcagtaggggcattttatggtagagggaaacgcggaggcacatacggggcacttctc
atggcaacatacaatccagacagtgatagctttgaaacagtatgtaaactgggaagcgga
ttcagcgatgtagatttagcaacaattccagaaaagctcaataaaaccaagctggattcc
aagtttacaagagtaaattctaagcttgaagcagacgtctggtttgaaccatatcttgtt
ctcgaagtaagaggtgcggaaataacactatctccaatccatacctgtgagcgcggagct
attcgagatgatgcagggtttgcaataagatttccgagatatactggaacaaccagaatt
gataagaaagcaagagatgctacaacaagtgctgaaataacagatatgtaccgtaagcag
ctgaaacaatcgaattaa

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