Manihot esculenta (cassava): 110615321
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Entry
110615321 CDS
T05761
Name
(RefSeq) ATP-dependent helicase BRM isoform X2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110615321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110615321
03036 Chromosome and associated proteins [BR:
mesc03036
]
110615321
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110615321
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
110615321
Chromatin remodeling factors
BAF complex
110615321
PBAF complex
110615321
GBAF(ncBAF) complex
110615321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
HDA2-3
AAA_14
Motif
Other DBs
NCBI-GeneID:
110615321
NCBI-ProteinID:
XP_021612843
LinkDB
All DBs
Position
1:complement(41261724..41273606)
Genome browser
AA seq
2243 aa
AA seq
DB search
MQSAGGGGPSRVGPAGRAASTSSAASPSSSSSAVSTPQLGFDSVQQQQQQQQMGSRQVLP
HQLLRKPEGNETLLAYQASAFQGAMGGNSFASSSGSMQMPQQSRKFFDLAQYHGSSQDGQ
NRNQAAEQVVLNPAHQAYLQFACQQQKPALAMQAQQAAKMGILGPATSKDQDMRMGNLKM
QEVMSMQAANQAQASSSKISSESFSRGEKLVEQAQQLASDQRNEQKPPSQAPVIGQLMPS
NVIRHMQAPQAQQSIQNMANNQLAMAAQLQAMQAWALERNIDLSVPANANLMAQLIPLMQ
SRMAAQQKPCETSAGLQASSVPVSMSKHQVASPSVASESSPRANSSSDASGQSGPPKVRQ
NASSVPFIPSSSAGMVNSTNNPSGQQFAFHSRENQVPPRTGVVLGNGMSPMLPPQQSANV
SQGADQTFPTKNALGSPENLQMQHLKQLNRSSLQPAGPSNDGGSSSHLPLQGGPAIQVAQ
PRVGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLELQQQLLPSAGGGNQDR
SGGKISEDQARHLESNEKNSLAIPSINGQNVAKDKAFAGDEKVTVSASHMPAATAVIREP
TMSVAAGKEEQQTAMFSVKPDQEVERSVQITPVRRDLAADKGKTVTPQVPVTDAAQVKKP
AQTSTPPQSKDAGSASARKYHGPLFDFPFFTRKHDSIGSSGMINTNNNLTLAYDVKDLLF
EEGMEVLNKKRSENLKKINGLLAINLERKRIRPDLVLRLQIEEKKLKLLDLQARLRDEVD
QQQQEIMAMPDRPYRKFVRLCERQRMEQARQVQASQKAMRDKQLKSIIQWRKKLLEAHWA
IRDARTARNRGVAKYHEKMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIEGD
AAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAAAARLQGLSDEEIRAAA
ACAGEEVMIRNRFMEMNAPRDGSSVSKYYHLAHAVNERVIRQPSMLRAGTLRDYQLVGLQ
WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH
NWLPSVSCIYYVGGKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKVEWKYIIIDE
AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF
SKPFQKEGPAHDAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC
RMSAIQSAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQPKVYKTLNNRCMELRKTCNHPLL
NYPYFNDFSKDFLIRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLV
YRRIDGTTSLEDRESAIVDFNSYGSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN
EEQAVARAHRIGQTREVKVIYMEAVVGKISSHQKEDELRTGGSLDLEDDLAGKDRYMGSI
ESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE
VNRMIARSEDEVELFDQMDEELDWTEEMTSYDQVPKWLRASTRDVNAAIANLSKKPSKNI
LFASGMGMETNEMETERKRGRPKGKKFPNYKEVDDDNGEFSEASSDERNGYSANEEGDIP
EFEDDESSGAVEAPPINKDQSEDDGPACDAGYEYSRASENTRNNQIVEQAGSAGSSSDNR
RITRMVSPVSSQKFGSLSALDARPGSVRKLPDELEEGEIAVSGDSHMDHQQSGSWMHDRD
EGEEEQVLQPKIKRKRSIRVRPRHTLEKTEEKSGIEAQRGDSGLLPFQMDHKYQSQLRTD
AEMKTFGEPSASRHDQSDSSKGRRNFPSRRMANTSKVHASPKSSRLNIQSAPAEDAAELS
RESWDGKVTTTNGNSLLGSKMSDIIHRRCKNVISKFQRRIDKEGQQIVPLLTALWKRTEN
SSYMSGAGNNLLDLRKIELRVDRLEYNGVMELVFDVQFMLKGTMQFYGFSHEVRSEARKV
HDLFFDILKIAFPDTDFREARNALSFSSTSSAPSPRQTTLGQGKRHRAINEVEPDNGTNL
KQIQRGSIHTGDDTRVKVQLPKEIRHGSSREQGHPGDSPLHPGELVICKKKRKDRDKSMV
KSRAGSSGPVSPPSMGRNITSPVPGSVSKDMRIAKQNSPQQRWANQPQLPNNGGISGGSG
NVGWANPVKRLRTDAGKRRPSHL
NT seq
6732 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgctgggggcggtgggcccagccgggtggggccggctgggcgggcggcgtcc
acgtcatcagcagcatcgccatcatcgtcttcctctgcagtatcgacgccgcagttaggg
ttcgactcagtacagcagcagcaacagcagcagcaaatggggtctagacaggtgttgcca
caccaattacttagaaaacctgaaggcaatgaaactctcttagcttatcaagctagtgct
tttcaaggagcaatgggaggaaacagttttgcttcatcttcaggttcaatgcaaatgcct
caacagtctagaaaattctttgatttggctcagtaccatggttcctcccaggatggccag
aataggaatcaagctgctgaacaagtagttctgaatccagcacatcaggcgtatctccag
tttgcttgccagcaacaaaagccagctttggcaatgcaggcacagcaagcagctaagatg
ggtattttgggccctgcaactagcaaggaccaggacatgcggatgggaaatttgaaaatg
caggaagtcatgtccatgcaggctgctaaccaagctcaggcatcatcgtccaaaatctca
tctgagagcttttctcgtggtgaaaagctggtggaacaagcacaacaactagcttctgat
cagaggaatgagcaaaagcctccaagccaagccccagttattggacaactaatgccttct
aatgttataagacacatgcaggcacctcaggcacagcaaagcatccaaaatatggcaaac
aatcagcttgcaatggctgctcagttgcaagcaatgcaggcatgggcacttgagagaaac
attgatctgtcagtacctgcaaatgcaaacttgatggcgcagctcatcccactcatgcaa
tcaagaatggctgcacagcaaaagccctgtgaaaccagtgcaggtctacaggcatcatct
gttcccgtgtcaatgtcaaagcatcaagttgcttctccatctgttgcaagtgagagttcc
ccacgcgctaattcttccagcgatgcttctgggcagtctggccctcctaaagtgaggcag
aatgcttcatctgtcccgtttattccaagttccagtgcagggatggtcaacagcaccaac
aacccttcagggcaacagtttgcctttcacagcagagagaaccaagtgcctcctagaact
ggggttgtgcttggaaatggaatgtctcccatgcttccacctcagcaatctgctaacgtg
agccaaggtgcagatcagacttttcctacaaaaaatgcattagggagcccagaaaattta
caaatgcagcatctcaagcaattgaatcgatcttctctgcaacctgctggtccttctaat
gatggaggatcaagcagccacttgccattgcagggtgggcctgctatccaggtggcacaa
ccgcgcgttgggttcactaaacaacaattacatgtccttaaagcacaaatacttgcattt
aggcgactgaagaaaggggaaggtacacttcctcaagagcttcttcgagctattgctcct
ccacctcttgagttgcagcagcaattacttccttctgcaggtggaggcaatcaggataga
tctggtgggaaaatttctgaggatcaagcgaggcatttggaatccaatgagaagaactct
ctggcaataccatctattaatggacagaatgttgcaaaagataaagcttttgcaggagat
gagaaagtaactgtctctgcaagtcatatgccagcagcaactgctgtaataagggaaccc
acaatgtcagtggctgctggaaaagaagagcagcaaactgctatgttttctgttaagcca
gaccaggaggtggaacgaagtgttcaaataacacctgttagaagagatcttgcagcagac
aagggaaaaacagttacaccacaggttcctgtaactgatgcagcacaagtgaagaaacct
gcacaaacaagtactccaccccagtcaaaagatgctggctctgccagtgccagaaagtat
catggaccattgtttgattttcccttttttactaggaagcatgattccattgggtcatca
gggatgatcaacactaacaataatctaacattggcatatgatgtcaaagatctgcttttt
gaggaaggtatggaagtgcttaacaagaagaggtcagaaaatctgaagaaaatcaatggt
ttactggcaataaatttagagaggaaaaggattagaccggatcttgtgttaaggttacaa
attgaagaaaaaaagcttaagcttctagatttacaggcacgcctaagagatgaagtagat
cagcagcagcaggagataatggcaatgcctgacaggccatatcggaagtttgttcggtta
tgtgagcgccaacggatggaacaagcaagacaagtacaggcctctcaaaaggccatgaga
gataaacaattgaagtctatcatacagtggcgcaagaaacttcttgaggcccattgggcc
atccgtgatgctcgaactgcccgcaacagaggagttgccaaataccatgagaaaatgttg
agagaattttctaagagaaaggatgacgataggaataaaaggatggaggcattaaagaac
aatgatgttgaacggtatcgggaaatgttgctggagcagcagactagcatagaaggtgac
gctgctgagagatatgctgttctctcatcgttcttgactcagacagaagaatatcttcat
aaactgggaagtaaaataacagctgccaagaatcaacaggaagtagaggaggctgcaaat
gctgcagctgcagctgcaagactacagggtttgtctgacgaagaaataagggcagcggca
gcatgtgctggggaggaagtcatgataagaaaccgatttatggaaatgaatgcacccagg
gatggttcatctgttagcaagtattaccatcttgctcatgctgtcaatgagagggtcata
aggcagccctccatgctacgagctggaacactacgagactatcagcttgtagggttgcag
tggatgctttctttgtataacaacaaactaaatggaatcctggcagatgagatgggtctt
ggaaaaactgttcaggtgatggcactgattgcttatctgatggaatttaaaggaaactat
ggtccacatcttataattgtcccaaatgctgtgttggtcaattggaagagtgagttgcat
aactggcttccatctgtatcatgcatttattatgttggtggaaaagatcaacggtcaaaa
ttgttttcccaagaggtttctgccatgaaatttaatgttcttgtgacaacttatgaattc
atcatgtatgatcgatcaaaactttcaaaagtggaatggaagtatatcattattgatgaa
gcacagagaatgaaggacagggaatcagttttagcccgtgatcttgacagatatcgctgc
cagaggcgcttacttctcacagggacaccgttgcagaatgatttgaaagaactttggtca
cttctaaatctacttctacctgaggtttttgataatcggaaagcatttcatgattggttc
tcaaaaccctttcaaaaggaaggtcctgcgcatgatgcagaggatgactggcttgaaact
gaaaagaaggttatcatcattcatcgccttcatcaaattttggagccgtttatgcttaga
cgtcgtgttgaagatgtggagggttctcttccacccaaggtttcaattgttttgagatgt
agaatgtctgctattcaaagtgccatttacgattggatcaaatccactggtactcttcga
gttgatcccgaagatgagaagcgtagagtccaaaaaaatcctatataccagcctaaggtg
tacaaaacattaaataacagatgtatggaactacggaagacctgcaatcatcctttgctc
aattacccttattttaatgacttttccaaggatttccttattagatcttgtgggaagttg
tggattctggataggatcctaataaaacttcaaaggacagggcatcgagtactacttttt
agtacaatgaccaagctccttgatatattggaggaatacttgcaatggcgaaggctggtg
tacagaaggatcgatggtacaacaagcctggaagatcgagaatcagctattgtggacttt
aatagctatggttctgactgctttatcttcttgctcagcattcgtgcggctggaaggggt
cttaatcttcaatccgctgacacagttatcatatatgatcctgatccaaaccctaagaat
gaggaacaggcagtggctagagcccaccgaattggacagacaagagaggtcaaagtcatt
tatatggaagcagttgttggcaaaatttctagccatcagaaagaggatgaattaagaact
ggaggttcacttgatctagaagatgaccttgcaggtaaagatcgatacatgggatctatt
gagagcctcataaggaataatattcaacaatataagattgacatggctgatgaagttatc
aatgctggacgctttgaccaaagaacaacacatgaagagagacgcatgactttggagaca
ttactgcatgatgaagagcggtatcaagaaacagtccatgatgttccatcgctgcaagag
gtaaatcgcatgattgcaaggagtgaagatgaagttgaattatttgatcaaatggatgaa
gagctggattggactgaagagatgacaagctatgaccaggtacctaaatggcttcgggct
agtacaagagatgtgaatgcggcaattgctaatttatcaaagaaaccttcaaaaaatata
ttgtttgctagtggcatgggtatggagaccaatgaaatggaaactgaaagaaaaaggggg
cgacccaaggggaaaaagtttcctaactacaaagaagttgatgatgacaatggagaattt
tctgaggctagttctgatgagagaaatggatattctgcaaatgaagagggagatatccca
gaatttgaagatgatgaatccagtggtgctgttgaggcacctcccatcaataaggaccaa
tctgaagatgatggtcctgcatgtgatgctggttatgagtattcccgggcttcagagaac
actagaaataatcagattgtagaacaagctggttctgctggatcttcctctgataatcgt
agaataacaagaatggtgtctcctgtttcttcacagaagtttggttccctgtctgcatta
gatgctagaccaggttctgttagaaagctgccagatgaattggaggaaggggaaattgcg
gtatctggggattctcacatggatcaccagcaatctggaagttggatgcatgatcgcgat
gaaggtgaagaggaacaggttttgcaacctaagataaaacgaaaacgcagtattcgggta
cggccacgccataccttagaaaagacagaggagaagtctggcattgaggcgcagcgtgga
gattcgggtttgttgccattccaaatggaccataaatatcaatcacagttgaggactgat
gctgaaatgaaaacatttggagagcccagtgcttccaggcatgatcagagtgattcctca
aaaggcaggagaaactttccttcaaggagaatggctaatacatcgaaggtgcatgcttca
cccaagtctagcagattgaatatacagtctgctcctgcagaagatgctgctgaactttct
agagagagttgggatggcaaagttacaactacaaatggaaattcattgttgggttctaag
atgtcagatataatccacagaaggtgcaaaaatgtaattagcaagttccaaaggagaata
gacaaggaaggccaacaaattgttcctctcctaactgccttgtggaaaaggactgagaat
tctagttacatgagtggtgctggaaataatcttttggatttgcggaagattgaattacgt
gttgacagattagaatacaatggagtcatggagcttgtgtttgatgtgcaatttatgttg
aagggcacaatgcaattctatgggttctcgcatgaggtgagatctgaagcaaggaaagta
catgatctcttttttgacattttgaagattgcatttccagacactgatttccgagaagct
agaaatgcactctctttctctagtaccagttctgctccatcgccaagacagacaacttta
ggacaaggcaagagacacagggcaattaatgaggtagaaccagacaatggcactaatctt
aagcaaattcaacgaggatcaattcatactggtgatgacacgagggtcaaagtccagttg
ccaaaggaaataaggcacgggagtagccgggaacaaggtcatccgggtgattctccactg
catccaggggagttggttatctgcaagaagaagaggaaagacagggataagtcaatggtg
aagtcgagggctggatctagtggcccagtttctccccctagcatgggtcgtaatatcacg
agtccagttccaggttcagtctctaaggatatgagaatagctaagcagaattctcctcag
caacggtgggccaaccagcctcaactgccaaataatggcggcatcagtggtggcagcggt
aatgttggttgggcaaatcctgtaaaaaggttgaggacagatgccggtaaaaggaggcct
agccatttatga
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integrated database retrieval system
