Manihot esculenta (cassava): 110623789
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Entry
110623789 CDS
T05761
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03030
DNA replication
mesc03410
Base excision repair
mesc03420
Nucleotide excision repair
mesc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110623789
03410 Base excision repair
110623789
03420 Nucleotide excision repair
110623789
03430 Mismatch repair
110623789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesc03032
]
110623789
03036 Chromosome and associated proteins [BR:
mesc03036
]
110623789
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110623789
DNA replication proteins [BR:
mesc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110623789
DNA Replication Termination Factors
ELG1-RFC complex
110623789
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
110623789
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110623789
Check point factors
HRAD17(Rad24)-RFC complex
110623789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T2SSE
DNA_pol3_delta
RuvB_N
RsgA_GTPase
PTB
Motif
Other DBs
NCBI-GeneID:
110623789
NCBI-ProteinID:
XP_021624504
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All DBs
Position
9:1980354..1985630
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AA seq
650 aa
AA seq
DB search
MPSPAIPRSTSEILISSSSSSKIRLPSSTRSTSSSSRSNKSSYWLAWSNVNKLGNFITIG
RKSSELSHSDLTEESLEAHNRRQEAFILQNQRVDYKNAKCSPYYKGLTDYSLDINREKHH
LNQSSSPGRESHATTFVSNSSSISSFVLVKIQEWTACFSSLKYSSTKDKQNHVPAPAPAA
ALASAPAPPVPVPVPEHPVESTPLETDKIVSSVIQEEKPLRERVLPSEPEPPSSSPPPPP
PPPPPPPSPPSIKAEAPAKVDEKNDTAIDMLDGRKQFTWADKYRPKALKDFICNQATATR
VQGLIKGEECNHFIFEGPTGVGKRTMISAMLREAYGPDRVKTREESKAFYLKGESVGSIE
VKIKVSSQHVEVNLSDLKGYEKHVIVDLIKETSNGMSKKGLQSKTDSCRAIILYNADKLS
ADAVLYIKWLLERNKGSSMFFFCCSDVSKLQPVKELCTFVQLHLPSNEEIVEVLEFIAEQ
EGIDLPREFAETIAINSKNNLRQAIRSLEASWERSYPFTEDQKFLTGWEDDIANIAKDMV
QEQSPKQLYIIRGKLQNLIEHDVSPSFIFKALVEELKGNLDTFCQLQLDNLYKDYILREK
LSLEDGKRPHDSAKHKFQKYMNIEEFIAKFMSLYKLHITTSKSMEHDSEA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgccgagtccagcaatccctcgttcaacttctgagattttaatctcctcttcctcttca
tccaagattcgccttccatcttccactcgctctactagctcatcttctcgatctaacaag
tcctcctactggcttgcttggagcaacgttaacaagcttggaaacttcatcaccattgga
agaaagagcagtgagttatctcattctgatttgacagaggaaagccttgaagctcataat
agaagacaagaagctttcatattacagaatcaaagggttgattataagaacgctaagtgc
agcccttattataaaggacttactgattattcacttgatataaaccgtgagaagcatcat
ttgaatcagtcttctagccctggacgtgaaagccatgctactacttttgtttccaattca
agttctatttcctctttcgttcttgttaagattcaagaatggactgcttgcttctcttcc
ctcaagtattcttctactaaggacaagcaaaatcatgttcctgctccggctccggctgct
gctctggcttcagctcctgctcctcctgttcctgttcctgtgcctgaacatccagtagaa
agtacgcccttggagactgataaaattgtttcatcggttattcaagaggagaagccattg
agggagagagtattgccatcagaacctgaaccaccatcatcatcaccaccaccaccacca
ccaccaccaccaccaccaccgtcaccaccatccataaaggctgaggcgcctgcaaaagtt
gatgagaaaaatgatacagccattgacatgttggatgggaggaagcagtttacttgggca
gacaagtatcgtcccaaagctttgaaagattttatctgcaatcaagctactgccactagg
gtgcagggtctgataaaaggcgaagagtgtaatcacttcatattcgagggacctactggt
gtgggaaaaagaaccatgatctcggctatgcttcgagaagcatatgggcccgacagagtg
aagactagggaagagtccaaagcattttacttgaagggagaatcagttgggagtatagaa
gtaaaaattaaggtatcttctcaacatgtagaagtcaatctctctgatctgaaaggctat
gagaaacatgtcatcgtggaccttatcaaagaaaccagtaatgggatgtcgaagaaaggt
ttgcagtcgaaaactgacagttgccgagcaatcattttatacaatgcagacaagctatct
gcagatgctgtcctgtacattaagtggctattggaaagaaataaagggtccagtatgttt
ttcttctgctgctctgatgtctcaaagcttcagccggtcaaggaactctgcacatttgtt
cagcttcacctgccttcaaacgaagagattgttgaagttttagaatttatagcagaacaa
gaaggcatagatttgccacgggaattcgctgaaactatagctataaactctaagaataat
ctgcgtcaagccattcgatctttagaggcctcctgggagagaagttatccatttacagaa
gatcaaaaattcttgaccgggtgggaagatgatattgcaaatattgccaaggacatggtc
caagaacaaagtcccaaacagctatatatcatacgtgggaagcttcaaaacctaatagag
catgatgtatcaccttcctttattttcaaagctctggttgaagaactgaaaggcaatttg
gatactttctgccaactgcaacttgacaacttgtacaaggattacattttaagagaaaaa
ctctcgttagaagatggtaaaaggcctcatgattctgccaaacacaaatttcagaaatac
atgaacattgaagagttcatagcaaaatttatgagcttgtacaagttacacatcaccact
tccaaaagcatggaacatgatagtgaagcatga
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