Manihot esculenta (cassava): 110631148
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Entry
110631148 CDS
T05761
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110631148
03041 Spliceosome [BR:
mesc03041
]
110631148
03036 Chromosome and associated proteins [BR:
mesc03036
]
110631148
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110631148
mRNA cycle factors
Common to processing body (P body) and stress granule
110631148
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110631148
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110631148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Spectrin_3
Motif
Other DBs
NCBI-GeneID:
110631148
NCBI-ProteinID:
XP_021634569
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All DBs
Position
14:10465619..10470719
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AA seq
633 aa
AA seq
DB search
MTWTDMITESTRKTTRPTRPSYVPPPFRNTPFGYPTEAMHTGSFSGSAYGFARSSPSQPG
SSRRGGGRSRGRGRGRSQRWSSHPANQNFNYQHQLVDVGENFDELEITEDGGSNNNTNEN
SVINFDAYEDIPVEITGSNIPPPVNTFTEIDLGQGLNENIMRCKYVKPTPVQKHAIPIAV
AGRDLMACAQTGSGKTAAFCFPIISGVLRNRFHTAGSGRGRSRMAYPSALILSPTRELSC
QIHEEAQKFAYNTGVKIVVAYGGAPIVQQFRNLEKGVDILVATPGRLVDMIERARVSLGM
IKYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGERQTMLFSATFPLEIQRLASDFLSNY
IFLTVGRVGSSTDLIAQRVELVQDMDKRSLLMDLLRSQKANGIHGKRPLTLVFVETKRGA
DALEHWLSMNGFPAIAIHGDKVQLERERALKSFKSGATPILVATDVASRGLDIPHVSHVI
NFDLPKDIDDYVHRIGRTGRAGKSGQATAFFCDKNIPLAKALVELMKEANQEVPSWLSQY
AEHSSHGAGSRTKRYGGGRFGGYDLRGPYGGADTGLDSYAASSAYGNAVSASTGYPAATE
DAGYSVAATGESYSTASHGYEFDNKSVSATGWD
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacttggactgatatgatcactgagtctacccggaaaacaactcgcccgacccgtcct
tcctatgtccctccacccttcagaaacaccccatttggttatcccaccgaggcgatgcac
actgggagtttttctgggtctgcttatggcttcgctcgctcttcgcccagtcaacccggt
tcgtctcgtcgtggtggaggtcgttcacgtggtcgtggccgtggacgttctcaacggtgg
tcctctcatcctgccaaccaaaattttaattaccaacaccagctggttgacgtaggtgaa
aattttgacgagctagagataacagaagatggtggtagtaataataataccaatgagaac
agtgttatcaactttgatgcgtatgaggacatccccgtcgaaatcacgggctccaacatt
cctccaccggtgaatactttcactgaaattgatctgggacagggtttgaatgagaatatt
atgaggtgcaagtatgtgaaaccaactccggtgcagaagcacgccatacccattgcggtt
gctgggagggacttgatggcttgtgcacagactgggtctgggaaaactgctgccttttgc
tttcccattatctctggggttttgaggaaccggtttcatactgctgggtcgggtcgtggt
aggtctaggatggcttatccatctgctctcattctgtctcctaccagggagttgtcttgt
cagattcatgaggaggcacagaagtttgcttataatactggagtaaagattgtggtggca
tatgggggagcgcccattgtacagcagtttcgcaatttggagaagggcgttgacatctta
gtggcaactcctggtcgcttagttgatatgattgagagagcacgagtttctcttgggatg
ataaagtatttggccctagatgaggctgatcgaatgttggatatgggatttgaacctcag
attcggaagattgtccaacaaatggacatgcctccaccaggtgaaaggcagactatgctt
ttcagtgccacttttccacttgagatacagagacttgcttctgattttctctccaattac
atctttctcactgtaggaagggttggctcaagcactgatttaattgcacaaagagttgaa
cttgttcaagatatggacaaaagaagccttcttatggatcttcttcgttcccaaaaggca
aatggaatccatggcaagaggccgttaactctggtttttgtggagacaaagagaggtgca
gatgccttagagcattggttgtccatgaatggtttcccagcaatagcaatacatggtgac
aaagtgcaattggagagagaaagagccctgaaatcctttaagagcggtgcgactccaatt
ttggtggcaactgatgttgcatcacgaggcttggacattcctcacgtgtctcatgtaatc
aattttgatctgccaaaagacatagatgattatgttcacagaataggccgaacaggacga
gccggtaaatctggacaggcaactgcatttttctgtgacaagaacatcccacttgcgaag
gcacttgttgaactaatgaaggaagcaaatcaggaggtaccttcttggcttagccagtat
gctgaacattcatctcatggagctggcagtaggaccaaacgatatggtggtggcaggttt
ggtggctatgacttgcgtggtccttatggtggtgctgataccggtttggattcttatgct
gcttccagtgcatatggcaatgctgtttcggccagtacaggttaccctgctgccacagaa
gatgctggttatagtgttgctgccactggtgaatcttattctactgcatcgcatggatat
gaatttgataacaaatcagttagtgctactggatgggactag
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